Result of FASTA (ccds) for
pF1KSDA0976
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0976, 364 aa
1>>>pF1KSDA0976 364 - 364 aa - 364 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0249+/-0.00088; mu= 12.9729+/- 0.053
mean_var=82.2164+/-15.994, 0's: 0 Z-trim(107.7): 36 B-trim: 41 in 1/49
Lambda= 0.141447
statistics sampled from 9733 (9765) to 9733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.3), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS30785.1 NTNG1 gene_id:22854|Hs108|chr1 ( 438) 2561 532.3 2.9e-151
CCDS81354.1 NTNG1 gene_id:22854|Hs108|chr1 ( 460) 2560 532.1 3.5e-151
CCDS44179.1 NTNG1 gene_id:22854|Hs108|chr1 ( 480) 2560 532.2 3.6e-151
CCDS44180.1 NTNG1 gene_id:22854|Hs108|chr1 ( 539) 2560 532.2 4e-151
CCDS6946.1 NTNG2 gene_id:84628|Hs108|chr9 ( 530) 1492 314.2 1.6e-85
CCDS32787.1 LAMA1 gene_id:284217|Hs108|chr18 (3075) 432 98.3 9.3e-20
CCDS33502.1 LAMA5 gene_id:3911|Hs108|chr20 (3695) 431 98.1 1.3e-19
CCDS5138.1 LAMA2 gene_id:3908|Hs108|chr6 (3122) 425 96.9 2.5e-19
CCDS45838.1 LAMA3 gene_id:3909|Hs108|chr18 (3277) 402 92.2 6.9e-18
CCDS42419.1 LAMA3 gene_id:3909|Hs108|chr18 (3333) 402 92.2 7e-18
CCDS9054.1 NTN4 gene_id:59277|Hs108|chr12 ( 628) 345 80.2 5.3e-15
CCDS11148.1 NTN1 gene_id:9423|Hs108|chr17 ( 604) 318 74.7 2.4e-13
CCDS10469.1 NTN3 gene_id:4917|Hs108|chr16 ( 580) 314 73.9 4e-13
CCDS83218.1 LAMB4 gene_id:22798|Hs108|chr7 ( 772) 302 71.5 2.8e-12
CCDS34732.1 LAMB4 gene_id:22798|Hs108|chr7 (1761) 302 71.7 5.6e-12
CCDS5750.1 LAMB1 gene_id:3912|Hs108|chr7 (1786) 284 68.0 7.3e-11
>>CCDS30785.1 NTNG1 gene_id:22854|Hs108|chr1 (438 aa)
initn: 2587 init1: 2561 opt: 2561 Z-score: 2829.1 bits: 532.3 E(32554): 2.9e-151
Smith-Waterman score: 2561; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
310 320 330 340 350 360
pF1KSD IGSK
::.
CCDS30 IGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPHGS
370 380 390 400 410 420
>>CCDS81354.1 NTNG1 gene_id:22854|Hs108|chr1 (460 aa)
initn: 2586 init1: 2560 opt: 2560 Z-score: 2827.7 bits: 532.1 E(32554): 3.5e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
310 320 330 340 350 360
pF1KSD IGSK
::.
CCDS81 IGNPPKFNRIWPNISSLEVSNPKQANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEK
370 380 390 400 410 420
>>CCDS44179.1 NTNG1 gene_id:22854|Hs108|chr1 (480 aa)
initn: 2586 init1: 2560 opt: 2560 Z-score: 2827.4 bits: 532.2 E(32554): 3.6e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
310 320 330 340 350 360
pF1KSD IGSK
::.
CCDS44 IGNPPKFNRIWPNISSLEVSNPKQVAPKLALSTVSSVQVANHKRANVCDNELLHCQNGGT
370 380 390 400 410 420
>>CCDS44180.1 NTNG1 gene_id:22854|Hs108|chr1 (539 aa)
initn: 2560 init1: 2560 opt: 2560 Z-score: 2826.6 bits: 532.2 E(32554): 4e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
310 320 330 340 350 360
pF1KSD IGSK
::.
CCDS44 IGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAQLDDENVCIEC
370 380 390 400 410 420
>>CCDS6946.1 NTNG2 gene_id:84628|Hs108|chr9 (530 aa)
initn: 1486 init1: 871 opt: 1492 Z-score: 1648.9 bits: 314.2 E(32554): 1.6e-85
Smith-Waterman score: 1492; 57.5% identity (83.6% similar) in 341 aa overlap (24-363:13-352)
10 20 30 40 50 60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
::. : ::.::. . :.:: .:...::::. . :
CCDS69 MLHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEFYACQPKVMRLKDY
10 20 30 40
70 80 90 100 110 120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
.:::..: :::::::: ::. :::.:.::::::.:.:::::.:::: : . .:.:::
CCDS69 VKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYWQS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
::..::.::..::::::.::.::::..:.::: ::: :.:::::: ::::::::.::
CCDS69 ITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQFYAE
110 120 130 140 150 160
190 200 210 220 230
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYST-GYTTNSKIIHFEIKDRFAFFAGPRLRN
::..:: :. . ..:.:. .. ...:::::: . . . : ..::..::::.:::: :::
CCDS69 DCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRN
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD MASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKC
: .:: .:...: :..:::.::::.::::::.: .:.. .: .::::::.:.: :::::
CCDS69 MDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKC
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD NLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSIS
::::..: . ...: ::::::::::::::::::.. : : :::::.:.:. :.: . .
CCDS69 NLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACA-TAG
290 300 310 320 330 340
360
pF1KSD SIGSK
:.:.
CCDS69 SFGNCECYGHSNRCSYIDFLNVVTCVSCKHNTRGQHCQHCRLGYYRNGSAELDDENVCIE
350 360 370 380 390 400
>>CCDS32787.1 LAMA1 gene_id:284217|Hs108|chr18 (3075 aa)
initn: 195 init1: 149 opt: 432 Z-score: 468.2 bits: 98.3 E(32554): 9.3e-20
Smith-Waterman score: 432; 31.8% identity (57.8% similar) in 308 aa overlap (69-354:38-324)
40 50 60 70 80
pF1KSD TEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-----GNPY---MCN
. :::. :: :: . : : .:
CCDS32 VLLLCVAAQCRQRGLFPAILNLASNAHISTNATCGEKGPEMFCKLVEHVPGRPVRNPQCR
10 20 30 40 50 60
90 100 110 120 130 140
pF1KSD NECDAST--PELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDN
::... :. :: .: : ...::: . .. . :.:::. ......
CCDS32 I-CDGNSANPRERHPISHAID--GT--NNWWQSPSIQNGREYHWVTITLDLRQVFQVAYV
70 80 90 100 110 120
150 160 170 180 190 200
pF1KSD IVITFESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEI
:. . .. :: . :::.::: : :..:.:::: ..::. ... :. . .. :.
CCDS32 IIKAANAPRPGNWILERSLD-GTTFSPWQYYAVSDSECLSRYNITPRRGPP-TYRADDEV
130 140 150 160 170 180
210 220 230 240 250
pF1KSD ICTEEYSTGYTTNSKIIHFE-IKDR-FAFFAGPRLRNMAS---LYGQLDTTKKLR-DFFT
::: :: . :: :. : : .:.: ...: . .:. . : :..:
CCDS32 ICTSYYSRLVPLEHGEIHTSLINGRPSADDLSPKLLEFTSARYIRLRLQRIRTLNADLMT
190 200 210 220 230 240
260 270 280 290 300 310
pF1KSD VTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNS--KLTCE
.. . . : : : . ::.:.:.::.: : : : ::. : .:.. :: :.
CCDS32 LSHREPKELDPIVTR---------RYYYSIKDISVGGMCICYGHASSCPWDETTKKLQCQ
250 260 270 280 290
320 330 340 350 360
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK
::::: : .:..: .:. .:: ::. . .: :::
CCDS32 CEHNTCGESCNRCCPGYHQQPWRPGT---VSSG--NTCEACNCHNKAKDCYYDESVAKQK
300 310 320 330 340
CCDS32 KSLNTAGQFRGGGVCINCLQNTMGINCETCIDGYYRPHKVSPYEDEPCRPCNCDPVGSLS
350 360 370 380 390 400
>>CCDS33502.1 LAMA5 gene_id:3911|Hs108|chr20 (3695 aa)
initn: 299 init1: 160 opt: 431 Z-score: 465.8 bits: 98.1 E(32554): 1.3e-19
Smith-Waterman score: 471; 29.2% identity (55.5% similar) in 346 aa overlap (28-354:41-356)
10 20 30 40 50
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEG-KVWDYMACQPE---
: ..: . :: .. .: :
CCDS33 LCVRGPRGPAPLLLVGLALLGAARAREEAGGGFSLHPPYFNLAEGARIAASATCGEEAPA
20 30 40 50 60 70
60 70 80 90 100 110
pF1KSD --STDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEG
: :. : :: .. ::: .:. .. .:. : :.. . ::: .:
CCDS33 RGSPRPTEDLYCKLVGGPVAGGDPNQTIRGQ----YCDI-CTAANSNKAHPASNAIDGTE
80 90 100 110 120
120 130 140 150 160 170
pF1KSD RHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRT
: .::: .. . .::.::. ....... .. .: ::: .::.:.:.:::
CCDS33 R----WWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPRPDLWVLERSMDFGRT
130 140 150 160 170 180
180 190 200 210 220
pF1KSD WQPYQYYAT---DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDR
.::.:..:. :::. : :.... ... . ::: ::: .:. .: .
CCDS33 YQPWQFFASSKRDCLERF--GPQTLERITRDDA--AICTTEYS-------RIVPLENGEI
190 200 210 220 230
230 240 250 260 270 280
pF1KSD FAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPA------VGEIFVDELHLA
. ... : : :. : ::.: .:..:.:.:: .:. . :
CCDS33 VVSLVNGRPGAMNFSYSPL-----LREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTR
240 250 260 270 280
290 300 310 320 330
pF1KSD RYFYAISDIKVRGRCKCNLHATVC----VYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW
::.:.:.::.. ::: :. :: .: : .: : :.::: : : .: ... .::
CCDS33 RYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPW
290 300 310 320 330 340
340 350 360
pF1KSD SPGSYLPIPKGTANTCIPSISSIGSK
.:.. ..:: :
CCDS33 KPAT-----ANSANECQSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHT
350 360 370 380 390 400
>>CCDS5138.1 LAMA2 gene_id:3908|Hs108|chr6 (3122 aa)
initn: 272 init1: 140 opt: 425 Z-score: 460.3 bits: 96.9 E(32554): 2.5e-19
Smith-Waterman score: 425; 29.6% identity (55.6% similar) in 304 aa overlap (69-354:55-346)
40 50 60 70 80 90
pF1KSD TEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-----GNPYMCNNEC
. :::. :: .: . :.: : .:
CCDS51 PQQQRQSQAHQQRGLFPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVR-NPQC
30 40 50 60 70 80
100 110 120 130 140
pF1KSD -----DASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDN
..:.:. :: .: :. .:.::: . :. . :.:::. .......
CCDS51 RICNQNSSNPNQRHPITNAID--GK--NTWWQSPSIKNGIEYHYVTITLDLQQVFQIAYV
90 100 110 120 130
150 160 170 180 190 200
pF1KSD IVITFESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEI
:: . .: :: . :::.::: ..:.::.: :.:: ... :.. : :.
CCDS51 IVKAANSPRPGNWILERSLD-DVEYKPWQYHAVTDTECLTLYNIYPRTGPP-SYAKDDEV
140 150 160 170 180 190
210 220 230 240 250 260
pF1KSD ICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLR-DFFTVTDLR
::: :: . .. ::. . . . : . . .. ... .: : . :
CCDS51 ICTSFYSKIHPLENGEIHISLIN-----GRPSADDPSPELLEFTSARYIRLRFQRIRTLN
200 210 220 230 240 250
270 280 290 300 310 320
pF1KSD IRLLRPAVGEIF-VDELHLARYFYAISDIKVRGRCKCNLHATVCVYD--NSKLTCECEHN
:. : . .: . ::.:...::.: : : : :: .: : ..: ::::::
CCDS51 ADLMMFAHKDPREIDPIVTRRYYYSVKDISVGGMCICYGHARACPLDPATNKSRCECEHN
260 270 280 290 300 310
330 340 350 360
pF1KSD TTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK
: : .: .: ... .:: :..: . : .:
CCDS51 TCGDSCDQCCPGFHQKPWRAGTFLTKTECEACNCHGKAEECYYDENVARRNLSLNIRGKY
320 330 340 350 360 370
CCDS51 IGGGVCINCTQNTAGINCETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLNEVCVKDEKH
380 390 400 410 420 430
>>CCDS45838.1 LAMA3 gene_id:3909|Hs108|chr18 (3277 aa)
initn: 303 init1: 146 opt: 402 Z-score: 434.6 bits: 92.2 E(32554): 6.9e-18
Smith-Waterman score: 427; 29.5% identity (55.2% similar) in 308 aa overlap (73-354:74-358)
50 60 70 80
pF1KSD KVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-GNP-----------YMCN
: : :: .: . :.: .:.
CCDS45 GLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCD
50 60 70 80 90 100
90 100 110 120 130 140
pF1KSD NECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIV
:.. :. ::: .: : .::: . . .::.::. .. .... :.
CCDS45 Y-CNSEDPRKAHPVTNAIDGSER----WWQSPPLSSGTQYNRVNLTLDLGQLFHVA-YIL
110 120 130 140 150
150 160 170 180 190 200
pF1KSD ITF-ESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEII
: : .: ::: .::.:.:.: :..:.::.: .::: : . ... ...
CCDS45 IKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREA----NMAVTRDDDVL
160 170 180 190 200 210
210 220 230 240 250 260
pF1KSD CTEEYSTGYTT-NSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRI
:. ::: :.... :. : : .:.. .. ::.: .:..:.
CCDS45 CVTEYSRIVPLENGEVVVSLINGR------PGAKNFT-------FSHTLREFTKATNIRL
220 230 240 250 260
270 280 290 300 310
pF1KSD RLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK--LTCE
:.:: .:... : ::.:.:.::.. :.: :: :: :: .: . . ::
CCDS45 RFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCE
270 280 290 300 310 320
320 330 340 350 360
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK
:.:.: : : .: .:. : : :... . : .:
CCDS45 CQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNT
330 340 350 360 370 380
CCDS45 QGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGS
390 400 410 420 430 440
>>CCDS42419.1 LAMA3 gene_id:3909|Hs108|chr18 (3333 aa)
initn: 303 init1: 146 opt: 402 Z-score: 434.5 bits: 92.2 E(32554): 7e-18
Smith-Waterman score: 427; 29.5% identity (55.2% similar) in 308 aa overlap (73-354:74-358)
50 60 70 80
pF1KSD KVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-GNP-----------YMCN
: : :: .: . :.: .:.
CCDS42 GLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCD
50 60 70 80 90 100
90 100 110 120 130 140
pF1KSD NECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIV
:.. :. ::: .: : .::: . . .::.::. .. .... :.
CCDS42 Y-CNSEDPRKAHPVTNAIDGSER----WWQSPPLSSGTQYNRVNLTLDLGQLFHVA-YIL
110 120 130 140 150
150 160 170 180 190 200
pF1KSD ITF-ESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEII
: : .: ::: .::.:.:.: :..:.::.: .::: : . ... ...
CCDS42 IKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREA----NMAVTRDDDVL
160 170 180 190 200 210
210 220 230 240 250 260
pF1KSD CTEEYSTGYTT-NSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRI
:. ::: :.... :. : : .:.. .. ::.: .:..:.
CCDS42 CVTEYSRIVPLENGEVVVSLINGR------PGAKNFT-------FSHTLREFTKATNIRL
220 230 240 250 260
270 280 290 300 310
pF1KSD RLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK--LTCE
:.:: .:... : ::.:.:.::.. :.: :: :: :: .: . . ::
CCDS42 RFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCE
270 280 290 300 310 320
320 330 340 350 360
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK
:.:.: : : .: .:. : : :... . : .:
CCDS42 CQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNT
330 340 350 360 370 380
CCDS42 QGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGS
390 400 410 420 430 440
364 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:30:20 2016 done: Thu Nov 3 04:30:21 2016
Total Scan time: 1.930 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]