FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0988, 1192 aa
  1>>>pF1KSDA0988 1192 - 1192 aa - 1192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7913+/-0.00103; mu= 19.4024+/- 0.061
 mean_var=63.6089+/-12.615, 0's: 0 Z-trim(103.4): 22  B-trim: 10 in 1/49
 Lambda= 0.160811
 statistics sampled from 7377 (7380) to 7377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.227), width:  16
 Scan time:  5.320

The best scores are:                                      opt bits E(32554)
CCDS45818.1 TBCD gene_id:6904|Hs108|chr17          (1192) 7873 1835.9       0


>>CCDS45818.1 TBCD gene_id:6904|Hs108|chr17               (1192 aa)
 initn: 7873 init1: 7873 opt: 7873  Z-score: 9857.3  bits: 1835.9 E(32554):    0
Smith-Waterman score: 7873; 99.8% identity (99.8% similar) in 1192 aa overlap (1-1192:1-1192)

               10        20        30        40        50        60
pF1KSD MALSDEPAAGGPEEEAEDETLAFGAALEAFGESAETRALLGRLREVHGGGAEREVALERF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MALSDEPAAGGPEEEAEDETLAFGAALEAFGESAETRALLGRLREVHGGGAEREVALERF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RVIMDKYQEQPHLLDPHLEWMMNLLLDIVQDQTSPASLVHLAFKFLYIITKVRGYKTFLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RVIMDKYQEQPHLLDPHLEWMMNLLLDIVQDQTSPASLVHLAFKFLYIITKVRGYKTFLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LFPHEVADVEPVLDLVTIQNPKDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLLTQPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LFPHEVADVEPVLDLVTIQNPKDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLLTQPGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ARMSIMDRILQIAESYLIVSDKARDAAAVLVSRFITRPDVKQSKMAEFLDWSLCNLARSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ARMSIMDRILQIAESYLIVSDKARDAAAVLVSRFITRPDVKQSKMAEFLDWSLCNLARSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD FQTMQGVITMDGTLQALAQIFKHGKREDCLPYAATVLRCLDGCRLPESNQTLLRKLGVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FQTMQGVITMDGTLQALAQIFKHGKREDCLPYAATVLRCLDGCRLPESNQTLLRKLGVKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VQRLGLTFLKPKVAAWRYQRGCRSLAANLQLLTQGQSEQKPLILTEDDDEDDDVPEGVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VQRLGLTFLKPKVAAWRYQRGCRSLAANLQLLTQGQSEQKPLILTEDDDEDDDVPEGVER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VIEQLLVGLKDKDTVVRWSAAKGIGRMAGRLPRALADDVVGSVLDCFSFQETDKAWHGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VIEQLLVGLKDKDTVVRWSAAKGIGRMAGRLPRALADDVVGSVLDCFSFQETDKAWHGGC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LALAELGRRGLLLPSRLVDVVAVILKALTYDEKRGACSVGTNVRDAACYVCCAFARAYEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS45 LALAELGRRGLLLPSRLVDVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD QELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSAT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QLYDRQLYRGLGGQLMRQAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QLYDRQLYRGLGGQLMRQAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSH
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNPEEMTRCGFSLALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNPEEMTRCGFSLALG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD CGENVSQIYCALLGCMDDYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CGENVSQIYCALLGCMDDYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD RIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEKLFPRSDVASVNWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEKLFPRSDVASVNWS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD APSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD SFSGTLLQIFEDNLLNERVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SFSGTLLQIFEDNLLNERVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD NSKDIQKLLSGIAVFCGMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYS
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS45 NSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190  
pF1KSD DVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLGVPRPQLVPQPGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLGVPRPQLVPQPGAC
             1150      1160      1170      1180      1190  




1192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:32:43 2016 done: Thu Nov  3 04:32:44 2016
 Total Scan time:  5.320 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]