FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1014, 1017 aa
  1>>>pF1KSDA1014 1017 - 1017 aa - 1017 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.2149+/-0.00114; mu= -11.1541+/- 0.070
 mean_var=496.4536+/-103.005, 0's: 0 Z-trim(116.2): 19  B-trim: 544 in 2/53
 Lambda= 0.057562
 statistics sampled from 16804 (16822) to 16804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.517), width:  16
 Scan time:  4.900

The best scores are:                                      opt bits E(32554)
CCDS41644.1 FNBP4 gene_id:23360|Hs108|chr11        (1017) 6693 570.9 4.6e-162


>>CCDS41644.1 FNBP4 gene_id:23360|Hs108|chr11             (1017 aa)
 initn: 6652 init1: 6652 opt: 6693  Z-score: 3023.0  bits: 570.9 E(32554): 4.6e-162
Smith-Waterman score: 6693; 99.6% identity (99.6% similar) in 1019 aa overlap (1-1017:1-1017)

               10        20        30        40        50          
pF1KSD MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTT--A
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS41 MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTA
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KSD VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
       :::::::::::::  :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VTAAAASDDSPSE--DEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
               70          80        90       100       110        

      120       130       140       150       160       170        
pF1KSD DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KSD KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
      180       190       200       210       220       230        

      240       250       260       270       280       290        
pF1KSD NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
      240       250       260       270       280       290        

      300       310       320       330       340       350        
pF1KSD EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
      300       310       320       330       340       350        

      360       370       380       390       400       410        
pF1KSD STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
      360       370       380       390       400       410        

      420       430       440       450       460       470        
pF1KSD RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
      420       430       440       450       460       470        

      480       490       500       510       520       530        
pF1KSD TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
      480       490       500       510       520       530        

      540       550       560       570       580       590        
pF1KSD SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
      540       550       560       570       580       590        

      600       610       620       630       640       650        
pF1KSD KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
      600       610       620       630       640       650        

      660       670       680       690       700       710        
pF1KSD SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
      660       670       680       690       700       710        

      720       730       740       750       760       770        
pF1KSD PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
      720       730       740       750       760       770        

      780       790       800       810       820       830        
pF1KSD TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
      780       790       800       810       820       830        

      840       850       860       870       880       890        
pF1KSD TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
      840       850       860       870       880       890        

      900       910       920       930       940       950        
pF1KSD TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
      900       910       920       930       940       950        

      960       970       980       990      1000      1010       
pF1KSD EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
      960       970       980       990      1000      1010       




1017 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:37:11 2016 done: Thu Nov  3 04:37:12 2016
 Total Scan time:  4.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]