Result of FASTA (omim) for
pF1KSDA1014
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1014, 1017 aa
1>>>pF1KSDA1014 1017 - 1017 aa - 1017 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.9034+/-0.000448; mu= -15.3822+/- 0.028
mean_var=585.5475+/-119.306, 0's: 0 Z-trim(124.7): 20 B-trim: 0 in 0/62
Lambda= 0.053002
statistics sampled from 46790 (46824) to 46790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.549), width: 16
Scan time: 17.970
The best scores are: opt bits E(85289)
NP_001305268 (OMIM: 615265) formin-binding protein (1019) 6721 529.4 3.8e-149
NP_056123 (OMIM: 615265) formin-binding protein 4 (1017) 6693 527.3 1.7e-148
>>NP_001305268 (OMIM: 615265) formin-binding protein 4 i (1019 aa)
initn: 6391 init1: 6391 opt: 6721 Z-score: 2798.7 bits: 529.4 E(85289): 3.8e-149
Smith-Waterman score: 6721; 99.8% identity (99.8% similar) in 1019 aa overlap (1-1017:1-1019)
10 20 30 40 50
pF1KSD MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTT--A
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KSD EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
970 980 990 1000 1010
>>NP_056123 (OMIM: 615265) formin-binding protein 4 isof (1017 aa)
initn: 6652 init1: 6652 opt: 6693 Z-score: 2787.2 bits: 527.3 E(85289): 1.7e-148
Smith-Waterman score: 6693; 99.6% identity (99.6% similar) in 1019 aa overlap (1-1017:1-1017)
10 20 30 40 50
pF1KSD MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTT--A
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_056 MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
NP_056 VTAAAASDDSPSE--DEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
70 80 90 100 110
120 130 140 150 160 170
pF1KSD DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
420 430 440 450 460 470
480 490 500 510 520 530
pF1KSD TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
480 490 500 510 520 530
540 550 560 570 580 590
pF1KSD SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
540 550 560 570 580 590
600 610 620 630 640 650
pF1KSD KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
600 610 620 630 640 650
660 670 680 690 700 710
pF1KSD SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
660 670 680 690 700 710
720 730 740 750 760 770
pF1KSD PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
720 730 740 750 760 770
780 790 800 810 820 830
pF1KSD TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
780 790 800 810 820 830
840 850 860 870 880 890
pF1KSD TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
840 850 860 870 880 890
900 910 920 930 940 950
pF1KSD TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
900 910 920 930 940 950
960 970 980 990 1000 1010
pF1KSD EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
960 970 980 990 1000 1010
1017 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:37:12 2016 done: Thu Nov 3 04:37:14 2016
Total Scan time: 17.970 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]