FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1045, 400 aa
  1>>>pF1KSDA1045 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0945+/-0.000751; mu= 14.1636+/- 0.045
 mean_var=94.3348+/-18.803, 0's: 0 Z-trim(111.1): 11  B-trim: 0 in 0/52
 Lambda= 0.132050
 statistics sampled from 12102 (12106) to 12102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.372), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS43796.1 PHF24 gene_id:23349|Hs108|chr9         ( 400) 2713 526.7 1.4e-149


>>CCDS43796.1 PHF24 gene_id:23349|Hs108|chr9              (400 aa)
 initn: 2713 init1: 2713 opt: 2713  Z-score: 2798.8  bits: 526.7 E(32554): 1.4e-149
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KSD MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKT
              310       320       330       340       350       360

              370       380       390       400
pF1KSD LLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG
       ::::::::::::::::::::::::::::::::::::::::
CCDS43 LLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG
              370       380       390       400




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:43:14 2016 done: Thu Nov  3 04:43:14 2016
 Total Scan time:  3.270 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]