FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1072, 757 aa
  1>>>pF1KSDA1072 757 - 757 aa - 757 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0630+/-0.00102; mu= -5.2157+/- 0.062
 mean_var=299.7571+/-60.391, 0's: 0 Z-trim(114.5): 26  B-trim: 205 in 1/52
 Lambda= 0.074078
 statistics sampled from 15088 (15107) to 15088 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.464), width:  16
 Scan time:  4.630

The best scores are:                                      opt bits E(32554)
CCDS11613.1 PPM1E gene_id:22843|Hs108|chr17        ( 755) 5159 565.1 1.4e-160
CCDS13796.1 PPM1F gene_id:9647|Hs108|chr22         ( 454) 1130 134.4 3.8e-31


>>CCDS11613.1 PPM1E gene_id:22843|Hs108|chr17             (755 aa)
 initn: 4959 init1: 4959 opt: 5159  Z-score: 2996.4  bits: 565.1 E(32554): 1.4e-160
Smith-Waterman score: 5159; 99.7% identity (99.7% similar) in 757 aa overlap (1-757:1-755)

               10        20        30        40        50        60
pF1KSD MAGCIPEEKTYRRFLELFLGEFRGPCGGGEPEPEPEPEPEPEPEPESEPEPEPELVEAEA
       ::::::::::::::::::::::::::::::::::::::::::::  ::::::::::::::
CCDS11 MAGCIPEEKTYRRFLELFLGEFRGPCGGGEPEPEPEPEPEPEPE--SEPEPEPELVEAEA
               10        20        30        40          50        

               70        80        90       100       110       120
pF1KSD AEASVEEPGEEAATVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAAPGHSAVPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEASVEEPGEEAATVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAAPGHSAVPPPP
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD PQLPPLPPLPRPLSERITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PQLPPLPPLPRPLSERITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDL
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KSD SAHYIPKETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRRPQLYYETSIHAIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAHYIPKETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRRPQLYYETSIHAIK
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KSD NMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMF
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KSD PHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKG
      300       310       320       330       340       350        

              370       380       390       400       410       420
pF1KSD QAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADS
      360       370       380       390       400       410        

              430       440       450       460       470       480
pF1KSD ASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSS
      420       430       440       450       460       470        

              490       500       510       520       530       540
pF1KSD DNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRPWPQHQCSAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRPWPQHQCSAPA
      480       490       500       510       520       530        

              550       560       570       580       590       600
pF1KSD DLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPGAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPGAPK
      540       550       560       570       580       590        

              610       620       630       640       650       660
pF1KSD KANLINELMMEKKSVQSSLPEWSGAGEFPTAFNLGSTGEQIYRMQSLSPVCSGLENEQFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KANLINELMMEKKSVQSSLPEWSGAGEFPTAFNLGSTGEQIYRMQSLSPVCSGLENEQFK
      600       610       620       630       640       650        

              670       680       690       700       710       720
pF1KSD SPGNRVSRLSHLRHHYSKKWHRFRFNPKFYSFLSAQEPSHKIGTSLSSLTGSGKRNRIRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPGNRVSRLSHLRHHYSKKWHRFRFNPKFYSFLSAQEPSHKIGTSLSSLTGSGKRNRIRS
      660       670       680       690       700       710        

              730       740       750       
pF1KSD SLPWRQNSWKGYSENMRKLRKTHDIPCPDLPWSYKIE
       :::::::::::::::::::::::::::::::::::::
CCDS11 SLPWRQNSWKGYSENMRKLRKTHDIPCPDLPWSYKIE
      720       730       740       750     

>>CCDS13796.1 PPM1F gene_id:9647|Hs108|chr22              (454 aa)
 initn: 1163 init1: 1070 opt: 1130  Z-score: 672.6  bits: 134.4 E(32554): 3.8e-31
Smith-Waterman score: 1244; 47.1% identity (70.1% similar) in 452 aa overlap (104-539:13-451)

            80        90       100       110         120       130 
pF1KSD TVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAAPGH--SAVPPPPPQLPPLPPLP-
                                     :. :  .::   . .   :  : :  ::: 
CCDS13                   MSSGAPQKSSPMASGAEETPGFLDTLLQDFPALLNPEDPLPW
                                 10        20        30        40  

              140       150       160       170       180          
pF1KSD RPLSERITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDLSAHY-IPKET
       .  .  ...::::::  .: .  : . . :  ::::::. . ...::.:::    .:.: 
CCDS13 KAPGTVLSQEEVEGELAELAMGFLGSRKAPPPLAAALAHEAVSQLLQTDLSEFRKLPREE
             50        60        70        80        90       100  

           190       200          210       220        230         
pF1KSD ------DGTEGTVEIETV---KLARSVFSKLHEICCSWVKDFPLRRRP-QLYYETSIHAI
             :  :  . .  .   .::.: :..: :.  .: :. ::  :  :  . .:::::
CCDS13 EEEEEDDDEEEKAPVTLLDAQSLAQSFFNRLWEVAGQWQKQVPLAARASQRQWLVSIHAI
            110       120       130       140       150       160  

     240       250       260       270       280       290         
pF1KSD KNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEM
       .: ::::::.:: .:.::.::.: :  ..::::::::::::::: ::..:.:.: .::  
CCDS13 RNTRRKMEDRHVSLPSFNQLFGLSDPVNRAYFAVFDGHGGVDAARYAAVHVHTNAARQPE
            170       180       190       200       210       220  

     300       310       320       330       340       350         
pF1KSD FPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRK
       .: ::  :: .::: ::. :..:: :: :. ::::: ..: :  :::::.:::::.::..
CCDS13 LPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQ
            230       240       250       260       270       280  

     360       370       380       390       400       410         
pF1KSD GQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDAD
       ::.:.::.::.:.:.::: ::::::: :  .  :::::.:.:::::::. .:::. :.::
CCDS13 GQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEAD
            290       300       310       320       330       340  

     420       430       440       450       460       470         
pF1KSD SASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGS
       .:: .: :.::::.::::::.:.:  .:.: .:..:: ...:..  ::..:::.::. ::
CCDS13 AASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVAAARERGS
            350       360       370       380       390       400  

     480       490       500       510       520       530         
pF1KSD SDNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRP--WPQHQCS
        :::::.::::::              .. ..::..  :: . .  .   :   :. . .
CCDS13 HDNITVMVVFLRD-------------PQELLEGGNQGEGDPQAEGRRQDLPSSLPEPETQ
            410                    420       430       440         

       540       550       560       570       580       590       
pF1KSD APADLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPG
       ::                                                          
CCDS13 APPRS                                                       
     450                                                           




757 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:51:28 2016 done: Thu Nov  3 04:51:29 2016
 Total Scan time:  4.630 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]