FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1094, 538 aa
  1>>>pF1KSDA1094 538 - 538 aa - 538 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2238+/-0.00037; mu= 25.0268+/- 0.023
 mean_var=64.5351+/-13.469, 0's: 0 Z-trim(112.0): 38  B-trim: 0 in 0/52
 Lambda= 0.159653
 statistics sampled from 20761 (20790) to 20761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.244), width:  16
 Scan time:  8.890

The best scores are:                                      opt bits E(85289)
NP_055723 (OMIM: 610746,610768) dolichol kinase [H ( 538) 3494 813.9       0


>>NP_055723 (OMIM: 610746,610768) dolichol kinase [Homo   (538 aa)
 initn: 3494 init1: 3494 opt: 3494  Z-score: 4346.1  bits: 813.9 E(85289):    0
Smith-Waterman score: 3494; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KSD MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KSD FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA
              490       500       510       520       530        




538 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:59:34 2016 done: Thu Nov  3 04:59:35 2016
 Total Scan time:  8.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]