FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA1094, 538 aa 1>>>pF1KSDA1094 538 - 538 aa - 538 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2238+/-0.00037; mu= 25.0268+/- 0.023 mean_var=64.5351+/-13.469, 0's: 0 Z-trim(112.0): 38 B-trim: 0 in 0/52 Lambda= 0.159653 statistics sampled from 20761 (20790) to 20761 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.244), width: 16 Scan time: 8.890 The best scores are: opt bits E(85289) NP_055723 (OMIM: 610746,610768) dolichol kinase [H ( 538) 3494 813.9 0 >>NP_055723 (OMIM: 610746,610768) dolichol kinase [Homo (538 aa) initn: 3494 init1: 3494 opt: 3494 Z-score: 4346.1 bits: 813.9 E(85289): 0 Smith-Waterman score: 3494; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538) 10 20 30 40 50 60 pF1KSD MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KSD VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW 370 380 390 400 410 420 430 440 450 460 470 480 pF1KSD LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI 430 440 450 460 470 480 490 500 510 520 530 pF1KSD FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA 490 500 510 520 530 538 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 04:59:34 2016 done: Thu Nov 3 04:59:35 2016 Total Scan time: 8.890 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]