(Circular) (Six-base) MAPSORT of: pF1KSDA1095.seq Check: 6061 from: 1 to: 6335 pF1KSDA1095 6335 bp With 182 enzymes: SgfI * June 20, 2008 10:34 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1116 1954 1116 Size: 838 5497 AccI GT'mk_AC Cuts at: 3293 3323 3373 3293 Size: 30 50 6255 Fragments arranged by size: 6255 50 30 Acc65I G'GTAC_C Cuts at: 3351 3351 Size: 6335 AclI AA'CG_TT Cuts at: 6175 6175 Size: 6335 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 193 1968 2623 2989 4160 4592 5339 5607 193 Size: 1775 655 366 1171 432 747 268 921 Fragments arranged by size: 1775 1171 921 747 655 432 366 268 AfeI AGC'GCT Cuts at: 436 620 2059 436 Size: 184 1439 4712 Fragments arranged by size: 4712 1439 184 AflIII A'CryG_T Cuts at: 521 3687 4791 5768 521 Size: 3166 1104 977 1088 Fragments arranged by size: 3166 1104 1088 977 AgeI A'CCGG_T Cuts at: 4723 4723 Size: 6335 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2344 2344 Size: 6335 AlwNI CAG_nnn'CTG Cuts at: 417 486 821 2628 2688 3069 3640 5207 417 Size: 69 335 1807 60 381 571 1567 1545 Fragments arranged by size: 1807 1567 1545 571 381 335 69 60 ApaLI G'TGCA_C Cuts at: 5105 5105 Size: 6335 ApoI r'AATT_y Cuts at: 781 1022 3339 5688 5944 781 Size: 241 2317 2349 256 1172 Fragments arranged by size: 2349 2317 1172 256 241 AseI AT'TA_AT Cuts at: 20 1544 20 Size: 1524 4811 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6335 AvaI C'yCGr_G Cuts at: 430 2388 2490 3355 430 Size: 1958 102 865 3410 Fragments arranged by size: 3410 1958 865 102 BamHI G'GATC_C Cuts at: 1269 2036 3360 1269 Size: 767 1324 4244 Fragments arranged by size: 4244 1324 767 BanI G'GyrC_C Cuts at: 2578 3351 3765 4013 4048 2578 Size: 773 414 248 35 4865 Fragments arranged by size: 4865 773 414 248 35 BanII G_rGCy'C Cuts at: 320 1115 1876 2072 2081 2345 2363 2671 2857 Size: 795 761 196 9 264 18 308 186 Cuts at: 2857 3349 4379 320 Size: 492 1030 2276 Fragments arranged by size: 2276 1030 795 761 492 308 264 196 186 18 9 BbeI G_GCGC'C Cuts at: 3769 4017 3769 Size: 248 6087 BbsI GAAGACnn'nnnn_ Cuts at: 225 1457 1781 225 Size: 1232 324 4779 Fragments arranged by size: 4779 1232 324 BbvCI CC'TCA_GC Cuts at: 1299 1299 Size: 6335 BciVI GTATCCnnnnn_n' Cuts at: 984 4233 4994 6335 984 Size: 3249 761 1341 984 Fragments arranged by size: 3249 1341 984 761 BclI T'GATC_A Cuts at: 3855 3855 Size: 6335 BglI GCCn_nnn'nGGC Cuts at: 557 730 557 Size: 173 6162 BglII A'GATC_T Cuts at: 2441 3850 5887 2441 Size: 1409 2037 2889 Fragments arranged by size: 2889 2037 1409 BlpI GC'TnA_GC Cuts at: 814 3447 814 Size: 2633 3702 Bme1580I G_kGCm'C Cuts at: 2581 3960 4053 5109 2581 Size: 1379 93 1056 3807 Fragments arranged by size: 3807 1379 1056 93 BmgBI CAC'GTC Cuts at: 159 231 327 501 2328 159 Size: 72 96 174 1827 4166 Fragments arranged by size: 4166 1827 174 96 72 BmrI ACTGGGnnnn_n' Cuts at: 3547 3628 3963 6107 3547 Size: 81 335 2144 3775 Fragments arranged by size: 3775 2144 335 81 BmtI G_CTAG'C Cuts at: 1748 1748 Size: 6335 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1314 4702 1314 Size: 3388 2947 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 220 628 1390 1396 1624 1729 2095 2200 2236 Size: 408 762 6 228 105 366 105 36 Cuts at: 2236 2458 3063 220 Size: 222 605 3492 Fragments arranged by size: 3492 762 605 408 366 228 222 105 105 36 6 Bpu10I CC'TnA_GC Cuts at: 1299 2224 2851 1299 Size: 925 627 4783 Fragments arranged by size: 4783 925 627 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 322 337 661 766 2065 2242 2481 3118 3511 Size: 15 324 105 1299 177 239 637 393 Cuts at: 3511 4390 4882 5180 322 Size: 879 492 298 1477 Fragments arranged by size: 1477 1299 879 637 492 393 324 298 239 177 105 15 BsaI GGTCTCn'nnnn_ Cuts at: 1520 6039 1520 Size: 4519 1816 BsaAI yAC'GTr Cuts at: 3327 3688 3327 Size: 361 5974 BsaBI GATnn'nnATC Cuts at: 6 1274 1468 3241 3849 5886 6 Size: 1268 194 1773 608 2037 455 Fragments arranged by size: 2037 1773 1268 608 455 194 BsaHI Gr'CG_yC Cuts at: 1901 2021 2141 3766 4014 4716 6212 1901 Size: 120 120 1625 248 702 1496 2024 Fragments arranged by size: 2024 1625 1496 702 248 120 120 BsaWI w'CCGG_w Cuts at: 1436 3524 4045 4723 4997 5144 5555 1436 Size: 2088 521 678 274 147 411 2216 Fragments arranged by size: 2216 2088 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 880 910 2068 2098 2692 2722 880 Size: 30 1158 30 594 30 4493 Fragments arranged by size: 4493 1158 594 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1303 1378 1726 2478 3067 1303 Size: 75 348 752 589 4571 Fragments arranged by size: 4571 752 589 348 75 BseYI C'CCAG_C Cuts at: 697 725 1252 1416 2677 2688 2756 3760 4518 Size: 28 527 164 1261 11 68 1004 758 Cuts at: 4518 5095 5591 697 Size: 577 496 1441 Fragments arranged by size: 1441 1261 1004 758 577 527 496 164 68 28 11 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 286 649 1144 1579 1678 1998 2272 286 Size: 363 495 435 99 320 274 4349 Fragments arranged by size: 4349 495 435 363 320 274 99 BsiEI CG_ry'CG Cuts at: 104 300 396 928 2009 2801 3877 3923 5131 Size: 196 96 532 1081 792 1076 46 1208 Cuts at: 5131 104 Size: 1308 Fragments arranged by size: 1308 1208 1081 1076 792 532 196 96 46 BsiHKAI G_wGCw'C Cuts at: 320 428 1858 1876 2072 2081 2345 2363 2857 Size: 108 1430 18 196 9 264 18 494 Cuts at: 2857 3349 4127 4317 5109 320 Size: 492 778 190 792 1546 Fragments arranged by size: 1546 1430 792 778 494 492 264 196 190 108 18 18 9 BsiWI C'GTAC_G Cuts at: 374 374 Size: 6335 Bsp1286I G_dGCh'C Cuts at: 320 428 1115 1858 1876 2072 2081 2345 2363 Size: 108 687 743 18 196 9 264 18 Cuts at: 2363 2581 2671 2857 3349 3960 4053 4127 4317 Size: 218 90 186 492 611 93 74 190 Cuts at: 4317 4379 5109 320 Size: 62 730 1546 Fragments arranged by size: 1546 743 730 687 611 492 264 218 196 190 186 108 93 90 74 62 18 18 9 BspEI T'CCGG_A Cuts at: 5555 5555 Size: 6335 BspHI T'CATG_A Cuts at: 1026 1074 3107 5511 1026 Size: 48 2033 2404 1850 Fragments arranged by size: 2404 2033 1850 48 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1116 1700 1954 1985 2711 3110 3385 3599 3901 Size: 584 254 31 726 399 275 214 302 Cuts at: 3901 4282 1116 Size: 381 3169 Fragments arranged by size: 3169 726 584 399 381 302 275 254 214 31 BsrBI CCG'CTC Cuts at: 50 336 2430 2470 2643 4627 4681 6165 6330 Size: 286 2094 40 173 1984 54 1484 165 Cuts at: 6330 50 Size: 55 Fragments arranged by size: 2094 1984 1484 286 173 165 55 54 40 BsrDI GCAATG_nn' Cuts at: 1493 1615 4247 1493 Size: 122 2632 3581 Fragments arranged by size: 3581 2632 122 BsrFI r'CCGG_y Cuts at: 241 923 2143 4333 4514 4723 241 Size: 682 1220 2190 181 209 1853 Fragments arranged by size: 2190 1853 1220 682 209 181 BssHII G'CGCG_C Cuts at: 179 286 454 591 611 638 659 693 797 Size: 107 168 137 20 27 21 34 104 Cuts at: 797 799 2235 2961 179 Size: 2 1436 726 3553 Fragments arranged by size: 3553 1436 726 168 137 107 104 34 27 21 20 2 BssSI C'ACGA_G Cuts at: 1819 2338 4606 4964 1819 Size: 519 2268 358 3190 Fragments arranged by size: 3190 2268 519 358 BstAPI GCAn_nnn'nTGC Cuts at: 417 2486 3712 417 Size: 2069 1226 3040 Fragments arranged by size: 3040 2069 1226 BstBI TT'CG_AA Cuts at: 110 4696 110 Size: 4586 1749 BstXI CCAn_nnnn'nTGG Cuts at: 1546 1923 1546 Size: 377 5958 BstYI r'GATC_y Cuts at: 1 1269 2036 2441 2565 2897 2972 3360 3827 Size: 1268 767 405 124 332 75 388 467 Cuts at: 3827 3850 4185 4431 5443 5529 5541 5887 1 Size: 23 335 246 1012 86 12 346 449 Fragments arranged by size: 1268 1012 767 467 449 405 388 346 335 332 246 124 86 75 23 12 BstZ17I GTA'TAC Cuts at: 3294 3324 3294 Size: 30 6305 BtgI C'CryG_G Cuts at: 125 294 734 2516 2801 3261 125 Size: 169 440 1782 285 460 3199 Fragments arranged by size: 3199 1782 460 440 285 169 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4285 4466 4629 4285 Size: 181 163 5991 Fragments arranged by size: 5991 181 163 BtsI GCAGTG_nn' Cuts at: 603 3578 603 Size: 2975 3360 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 454 489 454 Size: 35 6300 DraI TTT'AAA Cuts at: 3334 3334 Size: 6335 DraIII CAC_nnn'GTG Cuts at: 221 1430 3072 221 Size: 1209 1642 3484 Fragments arranged by size: 3484 1642 1209 DrdI GACnn_nn'nnGTC Cuts at: 4041 4899 4041 Size: 858 5477 EaeI y'GGCC_r Cuts at: 225 308 393 477 535 600 731 827 921 Size: 83 85 84 58 65 131 96 94 Cuts at: 921 925 2006 2798 3920 4094 4485 4512 5857 Size: 4 1081 792 1122 174 391 27 1345 Cuts at: 5857 225 Size: 703 Fragments arranged by size: 1345 1122 1081 792 703 391 174 131 96 94 85 84 83 65 58 27 4 EagI C'GGCC_G Cuts at: 393 925 2006 2798 3920 393 Size: 532 1081 792 1122 2808 Fragments arranged by size: 2808 1122 1081 792 532 EarI CTCTTCn'nnn_ Cuts at: 1565 1589 2089 2189 2975 3202 4358 4568 1565 Size: 24 500 100 786 227 1156 210 3332 Fragments arranged by size: 3332 1156 786 500 227 210 100 24 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1857 2488 4543 4853 4999 6145 1857 Size: 631 2055 310 146 1146 2047 Fragments arranged by size: 2055 2047 1146 631 310 146 EcoICRI GAG'CTC Cuts at: 318 1874 2070 2079 2343 2361 2855 3347 318 Size: 1556 196 9 264 18 494 492 3306 Fragments arranged by size: 3306 1556 494 492 264 196 18 9 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 193 220 628 1390 1396 1624 1729 1968 2095 Size: 27 408 762 6 228 105 239 127 Cuts at: 2095 2200 2236 2458 2623 2989 3063 4160 4592 Size: 105 36 222 165 366 74 1097 432 Cuts at: 4592 5339 5607 193 Size: 747 268 921 Fragments arranged by size: 1097 921 762 747 432 408 366 268 239 228 222 165 127 105 105 74 36 27 6 EcoNI CCTnn'n_nnAGG Cuts at: 3073 3073 Size: 6335 EcoO109I rG'GnC_Cy Cuts at: 195 204 2847 3474 195 Size: 9 2643 627 3056 Fragments arranged by size: 3056 2643 627 9 EcoRI G'AATT_C Cuts at: 3339 3339 Size: 6335 EcoRV GAT'ATC Cuts at: 2352 2352 Size: 6335 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 3240 4354 3240 Size: 1114 5221 FseI GG_CCGG'CC Cuts at: 927 927 Size: 6335 FspI TGC'GCA Cuts at: 2203 2332 4116 2203 Size: 129 1784 4422 Fragments arranged by size: 4422 1784 129 HaeII r_GCGC'y Cuts at: 345 438 622 676 691 2061 2102 2396 2699 Size: 93 184 54 15 1370 41 294 303 Cuts at: 2699 3039 3769 4017 5039 6018 345 Size: 340 730 248 1022 979 662 Fragments arranged by size: 1370 1022 979 730 662 340 303 294 248 184 93 54 41 15 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 880 912 937 969 1233 1265 1858 1890 2327 Size: 32 25 32 264 32 593 32 437 Cuts at: 2327 2359 2839 2871 4177 4207 4209 4239 880 Size: 32 480 32 1306 30 2 30 2976 Fragments arranged by size: 2976 1306 593 480 437 264 32 32 32 32 32 32 30 30 25 2 HincII GTy'rAC Cuts at: 987 1047 3374 987 Size: 60 2327 3948 Fragments arranged by size: 3948 2327 60 HindIII A'AGCT_T Cuts at: 1091 1091 Size: 6335 KasI G'GCGC_C Cuts at: 3765 4013 3765 Size: 248 6087 KpnI G_GTAC'C Cuts at: 3355 3355 Size: 6335 MluI A'CGCG_T Cuts at: 521 5768 521 Size: 5247 1088 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1835 1940 2399 2849 3104 5006 5190 1835 Size: 105 459 450 255 1902 184 2980 Fragments arranged by size: 2980 1902 459 450 255 184 105 MscI TGG'CCA Cuts at: 4096 4096 Size: 6335 MslI CAynn'nnrTG Cuts at: 1120 1240 1702 2326 4324 4451 1120 Size: 120 462 624 1998 127 3004 Fragments arranged by size: 3004 1998 624 462 127 120 MspA1I CmG'CkG Cuts at: 210 278 296 417 548 729 736 821 1182 Size: 68 18 121 131 181 7 85 361 Cuts at: 1182 1644 1832 1923 1970 2297 2486 2781 2990 Size: 462 188 91 47 327 189 295 209 Cuts at: 2990 3090 3446 3760 4120 5133 5378 210 Size: 100 356 314 360 1013 245 1167 Fragments arranged by size: 1167 1013 462 361 360 356 327 314 295 245 209 189 188 181 131 121 100 91 85 68 47 18 7 NaeI GCC'GGC Cuts at: 243 925 2145 4516 243 Size: 682 1220 2371 2062 Fragments arranged by size: 2371 2062 1220 682 NarI GG'CG_CC Cuts at: 3766 4014 3766 Size: 248 6087 NcoI C'CATG_G Cuts at: 125 125 Size: 6335 NgoMIV G'CCGG_C Cuts at: 241 923 2143 4514 241 Size: 682 1220 2371 2062 Fragments arranged by size: 2371 2062 1220 682 NheI G'CTAG_C Cuts at: 1744 1744 Size: 6335 NspI r_CATG'y Cuts at: 516 1707 2778 2841 3388 3888 4795 516 Size: 1191 1071 63 547 500 907 2056 Fragments arranged by size: 2056 1191 1071 907 547 500 63 PasI CC'CwG_GG Cuts at: 257 900 257 Size: 643 5692 PciI A'CATG_T Cuts at: 4791 4791 Size: 6335 PflMI CCAn_nnn'nTGG Cuts at: 1086 2628 2688 1086 Size: 1542 60 4733 Fragments arranged by size: 4733 1542 60 PfoI T'CCnGG_A Cuts at: 197 2072 2278 2363 2975 197 Size: 1875 206 85 612 3557 Fragments arranged by size: 3557 1875 612 206 85 PmeI GTTT'AAAC Cuts at: 3334 3334 Size: 6335 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5474 5506 5474 Size: 32 6303 PpuMI rG'GwC_Cy Cuts at: 195 204 2847 195 Size: 9 2643 3683 Fragments arranged by size: 3683 2643 9 PshAI GACnn'nnGTC Cuts at: 874 874 Size: 6335 PspXI vC'TCGA_Gb Cuts at: 430 2388 430 Size: 1958 4377 PstI C_TGCA'G Cuts at: 413 755 1002 1757 1951 3382 4067 413 Size: 342 247 755 194 1431 685 2681 Fragments arranged by size: 2681 1431 755 685 342 247 194 PvuI CG_AT'CG Cuts at: 104 104 Size: 6335 PvuII CAG'CTG Cuts at: 278 417 729 1182 1644 2486 2781 3760 4120 Size: 139 312 453 462 842 295 979 360 Cuts at: 4120 278 Size: 2493 Fragments arranged by size: 2493 979 842 462 453 360 312 295 139 RsrII CG'GwC_CG Cuts at: 1844 4530 1844 Size: 2686 3649 SacI G_AGCT'C Cuts at: 320 1876 2072 2081 2345 2363 2857 3349 320 Size: 1556 196 9 264 18 494 492 3306 Fragments arranged by size: 3306 1556 494 492 264 196 18 9 SacII CC_GC'GG Cuts at: 297 737 297 Size: 440 5895 SalI G'TCGA_C Cuts at: 3372 3372 Size: 6335 SapI GCTCTTCn'nnn_ Cuts at: 1589 2089 2189 2975 4358 4568 1589 Size: 500 100 786 1383 210 3356 Fragments arranged by size: 3356 1383 786 500 210 100 SbfI CC_TGCA'GG Cuts at: 3382 3382 Size: 6335 ScaI AGT'ACT Cuts at: 5852 5852 Size: 6335 SexAI A'CCwGG_T Cuts at: 3068 3068 Size: 6335 SfcI C'TryA_G Cuts at: 33 409 751 998 1392 1753 1947 2589 3378 Size: 376 342 247 394 361 194 642 789 Cuts at: 3378 4063 5056 5247 33 Size: 685 993 191 1121 Fragments arranged by size: 1121 993 789 685 642 394 376 361 342 247 194 191 SfiI GGCCn_nnn'nGGCC Cuts at: 730 730 Size: 6335 SfoI GGC'GCC Cuts at: 3767 4015 3767 Size: 248 6087 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6335 SmaI CCC'GGG Cuts at: 3357 3357 Size: 6335 SmlI C'TyrA_G Cuts at: 337 352 430 676 745 2080 2257 2388 2460 Size: 15 78 246 69 1335 177 131 72 Cuts at: 2460 3133 3490 4405 4897 5159 337 Size: 673 357 915 492 262 1513 Fragments arranged by size: 1513 1335 915 673 492 357 262 246 177 131 78 72 69 15 SnaBI TAC'GTA Cuts at: 3327 3327 Size: 6335 SpeI A'CTAG_T Cuts at: 67 67 Size: 6335 SphI G_CATG'C Cuts at: 3388 3888 3388 Size: 500 5835 SspI AAT'ATT Cuts at: 912 912 Size: 6335 StuI AGG'CCT Cuts at: 1016 1632 1016 Size: 616 5719 StyI C'CwwG_G Cuts at: 125 1004 1106 1144 1502 1961 3080 3469 3823 Size: 879 102 38 358 459 1119 389 354 Cuts at: 3823 125 Size: 2637 Fragments arranged by size: 2637 1119 879 459 389 358 354 102 38 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 249 1861 3918 4051 4510 4719 249 Size: 1612 2057 133 459 209 1865 Fragments arranged by size: 2057 1865 1612 459 209 133 TatI w'GTAC_w Cuts at: 2117 5850 2117 Size: 3733 2602 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 160 192 352 384 2068 2100 2550 2582 5852 Size: 32 160 32 1684 32 450 32 3270 Cuts at: 5852 5884 160 Size: 32 611 Fragments arranged by size: 3270 1684 611 450 160 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4132 4132 Size: 6335 XbaI T'CTAG_A Cuts at: 3366 3366 Size: 6335 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2625 2685 3830 2625 Size: 60 1145 5130 Fragments arranged by size: 5130 1145 60 XhoI C'TCGA_G Cuts at: 430 2388 430 Size: 1958 4377 XmaI C'CCGG_G Cuts at: 3355 3355 Size: 6335 XmnI GAAnn'nnTTC Cuts at: 781 3223 781 Size: 2442 3893 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflIII AgeI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI BstZ17I BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FseI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PspXI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI Enzymes that do not cut: AatII AflII AhdI AleI AloI ApaI AscI AvrII BaeI BcgI BfrBI BsmI BsmBI BsrGI BstEII Bsu36I ClaI FspAI HpaI MfeI NdeI NotI NruI NsiI PacI PmlI PsiI PspOMI PsrI SanDI SgrAI SrfI SwaI ZraI