FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1158, 215 aa
  1>>>pF1KSDA1158 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2754+/-0.000988; mu= 14.2498+/- 0.059
 mean_var=81.8437+/-16.643, 0's: 0 Z-trim(105.3): 56  B-trim: 0 in 0/51
 Lambda= 0.141769
 statistics sampled from 8293 (8338) to 8293 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.256), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS8442.1 SCN3B gene_id:55800|Hs108|chr11         ( 215) 1430 302.1 1.8e-82
CCDS12441.1 SCN1B gene_id:6324|Hs108|chr19         ( 218)  604 133.1 1.3e-31
CCDS46047.1 SCN1B gene_id:6324|Hs108|chr19         ( 268)  337 78.6 4.1e-15


>>CCDS8442.1 SCN3B gene_id:55800|Hs108|chr11              (215 aa)
 initn: 1430 init1: 1430 opt: 1430  Z-score: 1594.2  bits: 302.1 E(32554): 1.8e-82
Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KSD MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC
              130       140       150       160       170       180

              190       200       210     
pF1KSD YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE
       :::::::::::::::::::::::::::::::::::
CCDS84 YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE
              190       200       210     

>>CCDS12441.1 SCN1B gene_id:6324|Hs108|chr19              (218 aa)
 initn: 553 init1: 313 opt: 604  Z-score: 681.1  bits: 133.1 E(32554): 1.3e-31
Smith-Waterman score: 604; 49.5% identity (72.9% similar) in 214 aa overlap (10-215:5-218)

               10        20        30        40        50        60
pF1KSD MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
                :: .:    ::     :::: :::::: :  .:. :::: .: :..: : .
CCDS12      MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFT
                    10        20        30        40        50     

               70         80          90          100       110    
pF1KSD EWFYRPEGGKDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLND
       :: .: .: ..:. : .:.:   ..:    :.::. ::::   :::::.:: . ::: : 
CCDS12 EWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNH
          60        70        80        90       100       110     

          120       130       140       150       160       170    
pF1KSD SGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLL
       :: : :.: : . :: ..  ..... : ..:...:..:..:.:::::::.:.: ::.::.
CCDS12 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLV
         120       130       140       150       160       170     

          180        190       200        210     
pF1KSD IEMIYCYRKVSKAEE-AAQENASDYLAIPSENKEN-SAVPVEE
        ::::::.:.. : : :::::::.:::: ::.::: ..: : :
CCDS12 AEMIYCYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
         180       190       200       210        

>>CCDS46047.1 SCN1B gene_id:6324|Hs108|chr19              (268 aa)
 initn: 342 init1: 177 opt: 337  Z-score: 384.8  bits: 78.6 E(32554): 4.1e-15
Smith-Waterman score: 337; 43.2% identity (66.2% similar) in 148 aa overlap (10-151:5-151)

               10        20        30        40        50        60
pF1KSD MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
                :: .:    ::     :::: :::::: :  .:. :::: .: :..: : .
CCDS46      MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFT
                    10        20        30        40        50     

               70         80          90          100       110    
pF1KSD EWFYRPEGGKDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLND
       :: .: .: ..:. : .:.:   ..:    :.::. ::::   :::::.:: . ::: : 
CCDS46 EWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNH
          60        70        80        90       100       110     

          120       130       140       150       160       170    
pF1KSD SGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLL
       :: : :.: : . :: ..  ..... : ..:... ::                       
CCDS46 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK-GESGAACPFTVTHRRARWRDRWQAV
         120       130       140        150       160       170    

          180       190       200       210                        
pF1KSD IEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE                   
                                                                   
CCDS46 DRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCH
          180       190       200       210       220       230    




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:11:03 2016 done: Thu Nov  3 05:11:03 2016
 Total Scan time:  2.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]