FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1171, 559 aa
  1>>>pF1KSDA1171 559 - 559 aa - 559 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7985+/-0.000888; mu= 16.7593+/- 0.054
 mean_var=78.4038+/-15.580, 0's: 0 Z-trim(107.6): 44  B-trim: 0 in 0/50
 Lambda= 0.144846
 statistics sampled from 9625 (9669) to 9625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.297), width:  16
 Scan time:  3.500

The best scores are:                                      opt bits E(32554)
CCDS55980.1 TBC1D24 gene_id:57465|Hs108|chr16      ( 559) 3805 804.8       0
CCDS42107.1 TBC1D24 gene_id:57465|Hs108|chr16      ( 553) 3752 793.7       0


>>CCDS55980.1 TBC1D24 gene_id:57465|Hs108|chr16           (559 aa)
 initn: 3805 init1: 3805 opt: 3805  Z-score: 4296.3  bits: 804.8 E(32554):    0
Smith-Waterman score: 3805; 99.8% identity (100.0% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KSD MDSPGYNCFVDKDKMDAAIQDLGPKELSCTELQELKQLARQGYWAQSHALRGKVYQRLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDSPGYNCFVDKDKMDAAIQDLGPKELSCTELQELKQLARQGYWAQSHALRGKVYQRLIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD MTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGELPLCYFARVFDVFLVEGYKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGELPLCYFARVFDVFLVEGYKVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLLSRKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS55 YRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLFSRKEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QLLQMANEKALKQKGITVKQKSVSLSKRQFVHLAVHAENFRSEIVSVREMRDIWSWVPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLLQMANEKALKQKGITVKQKSVSLSKRQFVHLAVHAENFRSEIVSVREMRDIWSWVPER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PFLAARHFNLPSKTESMFMAGGSDCLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFLAARHFNLPSKTESMFMAGGSDCLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLCS
              490       500       510       520       530       540

              550         
pF1KSD ENFLIAAVEAWGFQDPDTQ
       :::::::::::::::::::
CCDS55 ENFLIAAVEAWGFQDPDTQ
              550         

>>CCDS42107.1 TBC1D24 gene_id:57465|Hs108|chr16           (553 aa)
 initn: 2150 init1: 2150 opt: 3752  Z-score: 4236.5  bits: 793.7 E(32554):    0
Smith-Waterman score: 3752; 98.7% identity (98.9% similar) in 559 aa overlap (1-559:1-553)

               10        20        30        40        50        60
pF1KSD MDSPGYNCFVDKDKMDAAIQDLGPKELSCTELQELKQLARQGYWAQSHALRGKVYQRLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDSPGYNCFVDKDKMDAAIQDLGPKELSCTELQELKQLARQGYWAQSHALRGKVYQRLIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD MTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGELPLCYFARVFDVFLVEGYKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGELPLCYFARVFDVFLVEGYKVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLLSRKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS42 YRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLFSRKEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QLLQMANEKALKQKGITVKQKSVSLSKRQFVHLAVHAENFRSEIVSVREMRDIWSWVPER
       :::::::::::::::::::::      :::::::::::::::::::::::::::::::::
CCDS42 QLLQMANEKALKQKGITVKQK------RQFVHLAVHAENFRSEIVSVREMRDIWSWVPER
              310       320             330       340       350    

              370       380       390       400       410       420
pF1KSD FALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGG
          360       370       380       390       400       410    

              430       440       450       460       470       480
pF1KSD KLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLS
          420       430       440       450       460       470    

              490       500       510       520       530       540
pF1KSD PFLAARHFNLPSKTESMFMAGGSDCLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PFLAARHFNLPSKTESMFMAGGSDCLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLCS
          480       490       500       510       520       530    

              550         
pF1KSD ENFLIAAVEAWGFQDPDTQ
       :::::::::::::::::::
CCDS42 ENFLIAAVEAWGFQDPDTQ
          540       550   




559 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:12:58 2016 done: Thu Nov  3 05:12:58 2016
 Total Scan time:  3.500 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]