Result of FASTA (ccds) for
pF1KSDA1184
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1184, 385 aa
1>>>pF1KSDA1184 385 - 385 aa - 385 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5585+/-0.000624; mu= 15.9568+/- 0.038
mean_var=67.0140+/-13.341, 0's: 0 Z-trim(111.3): 12 B-trim: 0 in 0/51
Lambda= 0.156672
statistics sampled from 12287 (12298) to 12287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.378), width: 16
Scan time: 3.000
The best scores are: opt bits E(32554)
CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 ( 385) 2625 601.7 3.7e-172
CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 ( 361) 2114 486.1 2.1e-137
CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 ( 260) 647 154.5 1e-37
CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 ( 308) 647 154.5 1.2e-37
CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 ( 282) 585 140.5 1.8e-33
CCDS42816.1 PNKD gene_id:25953|Hs108|chr2 ( 142) 519 125.5 3.1e-29
CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 ( 254) 278 71.1 1.3e-12
CCDS66900.1 HAGH gene_id:3029|Hs108|chr16 ( 236) 274 70.2 2.2e-12
>>CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 (385 aa)
initn: 2625 init1: 2625 opt: 2625 Z-score: 3204.3 bits: 601.7 E(32554): 3.7e-172
Smith-Waterman score: 2625; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KSD MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EYIPRKRGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EYIPRKRGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKHWDHSGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKHWDHSGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 NRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EPYKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWPGHEYAEENLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EPYKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWPGHEYAEENLGF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AGVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 AGVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPGP
310 320 330 340 350 360
370 380
pF1KSD TGDDDYSRAQLLEELRRLKDMHKSK
:::::::::::::::::::::::::
CCDS24 TGDDDYSRAQLLEELRRLKDMHKSK
370 380
>>CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 (361 aa)
initn: 2148 init1: 2114 opt: 2114 Z-score: 2580.5 bits: 486.1 E(32554): 2.1e-137
Smith-Waterman score: 2114; 100.0% identity (100.0% similar) in 306 aa overlap (80-385:56-361)
50 60 70 80 90 100
pF1KSD KEEPEPLSPELEYIPRKRGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHS
::::::::::::::::::::::::::::::
CCDS24 LLVSPRGCRARRGLRGLLMAHSQRLLFRIGYSLYTRTWLGYLFYRQQLRRARNRYPKGHS
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD KTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 KTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAIL
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD CTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 CTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGH
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD TQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 TQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWP
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD GHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLA
270 280 290 300 310 320
350 360 370 380
pF1KSD LQEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK
::::::::::::::::::::::::::::::::::::
CCDS24 LQEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK
330 340 350 360
>>CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 (260 aa)
initn: 550 init1: 324 opt: 647 Z-score: 790.7 bits: 154.5 E(32554): 1e-37
Smith-Waterman score: 648; 40.6% identity (69.2% similar) in 266 aa overlap (119-383:1-256)
90 100 110 120 130 140
pF1KSD GYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDP
.:: .:.:.::: ::.:: ... :. :::
CCDS32 MKVEVLPALTDNYMYLVIDDETKEAAIVDP
10 20 30
150 160 170 180 190 200
pF1KSD SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPL
.:. : . .:.:: :...: ::.::::.:::. : . . .:::. .: : ::: .
CCDS32 VQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGG-DDRIGALTHKI
40 50 60 70 80
210 220 230 240 250 260
pF1KSD CHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNA
: ....:: :... :::: ::.::. :... . : .:.:: ::..:::. .::.:
CCDS32 THLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTA
90 100 110 120 130 140
270 280 290 300 310 320
pF1KSD ETMLSSLDTVLG-LGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKG
. : ..: ::: : :: .. ::::. .:: :: ::: : : ..:. :.... .
CCDS32 DEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEP
150 160 170 180 190 200
330 340 350 360 370 380
pF1KSD TCPSTLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK
: ::::.:: .::::.:.. ..:. .:. : . .. .:: ::. :
CCDS32 TVPSTLAEEFTYNPFMRVREKTVQQH-------AGETDP--VTTMRAVRREKDQFKMPRD
210 220 230 240 250 260
>>CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 (308 aa)
initn: 550 init1: 324 opt: 647 Z-score: 789.5 bits: 154.5 E(32554): 1.2e-37
Smith-Waterman score: 648; 40.6% identity (69.2% similar) in 266 aa overlap (119-383:49-304)
90 100 110 120 130 140
pF1KSD GYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDP
.:: .:.:.::: ::.:: ... :. :::
CCDS10 ACARRGLGPALLGVFCHTDLRKNLTVDEGTMKVEVLPALTDNYMYLVIDDETKEAAIVDP
20 30 40 50 60 70
150 160 170 180 190 200
pF1KSD SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPL
.:. : . .:.:: :...: ::.::::.:::. : . . .:::. .: : ::: .
CCDS10 VQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGG-DDRIGALTHKI
80 90 100 110 120 130
210 220 230 240 250 260
pF1KSD CHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNA
: ....:: :... :::: ::.::. :... . : .:.:: ::..:::. .::.:
CCDS10 THLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTA
140 150 160 170 180 190
270 280 290 300 310 320
pF1KSD ETMLSSLDTVLG-LGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKG
. : ..: ::: : :: .. ::::. .:: :: ::: : : ..:. :.... .
CCDS10 DEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEP
200 210 220 230 240 250
330 340 350 360 370 380
pF1KSD TCPSTLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK
: ::::.:: .::::.:.. ..:. .:. : . .. .:: ::. :
CCDS10 TVPSTLAEEFTYNPFMRVREKTVQQH-------AGETDP--VTTMRAVRREKDQFKMPRD
260 270 280 290 300
>>CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 (282 aa)
initn: 582 init1: 373 opt: 585 Z-score: 714.4 bits: 140.5 E(32554): 1.8e-33
Smith-Waterman score: 585; 43.8% identity (65.9% similar) in 226 aa overlap (119-344:1-225)
90 100 110 120 130 140
pF1KSD GYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDP
.:: :::: ::: ::.:. .. :::::
CCDS32 MKVKVIPVLEDNYMYLVIEELTREAVAVDV
10 20 30
150 160 170 180 190 200
pF1KSD SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPL
. :. . . .:::.:.:.: ::.::::. :: .:.: . : :. .. : ::. :
CCDS32 AVPKRLLEIVGREGVSLTAVLTTHHHWDHARGNPELARLRPGLAVLGA-DERIFSLTRRL
40 50 60 70 80
210 220 230 240 250 260
pF1KSD CHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNA
: . . : ...: : ::::: ::. :.: . : ::::: : ..::: .::.:
CCDS32 AHGEELRFGAIHVRCLLTPGHTAGHMSYFLWEDDCPDPPALFSGDALSVAGCGSCLEGSA
90 100 110 120 130 140
270 280 290 300 310 320
pF1KSD ETMLSSLDTVLGLGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKGT
. : .:: . : .: .. :::.. :: :: ::: : . :..:.... . :
CCDS32 QQMYQSLAELGTLPPETKVFCGHEHTLSNLEFAQKVEPCNDHVRAKLSWAKKRDEDDVPT
150 160 170 180 190 200
330 340 350 360 370 380
pF1KSD CPSTLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK
:::::::: ::::::
CCDS32 VPSTLGEERLYNPFLRVAEEPVRKFTGKAVPADVLEALCKERARFEQAGEPRQPQARALL
210 220 230 240 250 260
>>CCDS42816.1 PNKD gene_id:25953|Hs108|chr2 (142 aa)
initn: 511 init1: 511 opt: 519 Z-score: 638.4 bits: 125.5 E(32554): 3.1e-29
Smith-Waterman score: 519; 72.6% identity (83.8% similar) in 117 aa overlap (1-117:1-115)
10 20 30 40 50 60
pF1KSD MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EYIPRKRGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVK
::::::::::::::::::: . : ... .... . : . : .. . :: :
CCDS42 EYIPRKRGKNPMKAVGLAWAIGFPCGILLFILTKREVDKDRVKQMK--ARQNMRLSNTGE
70 80 90 100 110
130 140 150 160 170 180
pF1KSD VLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKHWDHSGG
CCDS42 YESQRFRASSQSAPSPDVGSGVQT
120 130 140
>>CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 (254 aa)
initn: 297 init1: 73 opt: 278 Z-score: 340.1 bits: 71.1 E(32554): 1.3e-12
Smith-Waterman score: 278; 31.2% identity (55.8% similar) in 224 aa overlap (97-313:6-214)
70 80 90 100 110 120
pF1KSD RGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPV
:: :: . . .. : :. . . ::
CCDS12 MAEAVLRVARRQLSQRGGSGAPILL---RQMFEPV
10 20 30
130 140 150 160 170 180
pF1KSD LSDNYSYLIIDTQAQLAVAVDP---SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRD
: ...::. : ... :: .:: . :: .: :.. :. :. . :: : :: :.
CCDS12 -SCTFTYLLGDRESREAVLIDPVLETAPRDAQL-IKELGLRLLYAVNTHCHADHITGSGL
40 50 60 70 80 90
190 200 210 220 230 240
pF1KSD LSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPY
: :. : .: : . : . ::. ... :.:::: : ....:. .
CCDS12 LRSLLPGCQSVISRLSGAQADLH-IEDGDSIRFGRFALETRASPGHTPGCVTFVLNDH--
100 110 120 130 140
250 260 270 280 290 300
pF1KSD KGPSCLFSGDLLFLSGCGRT-FE-GNAETMLSSL-DTVLGLGDDTLLWPGHEYAEENLGF
: :.:: :.. ::::: :. : :.:. :. . .. : : :..:.:.: ::
CCDS12 ---SMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYH----GF
150 160 170 180 190 200
310 320 330 340 350
pF1KSD A-GVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPG
. ..:: : :
CCDS12 TVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCGVQTPTA
210 220 230 240 250
>>CCDS66900.1 HAGH gene_id:3029|Hs108|chr16 (236 aa)
initn: 265 init1: 246 opt: 274 Z-score: 335.7 bits: 70.2 E(32554): 2.2e-12
Smith-Waterman score: 274; 42.9% identity (73.5% similar) in 98 aa overlap (119-216:49-145)
90 100 110 120 130 140
pF1KSD GYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDP
.:: .:.:.::: ::.:: ... :. :::
CCDS66 ACARRGLGPALLGVFCHTDLRKNLTVDEGTMKVEVLPALTDNYMYLVIDDETKEAAIVDP
20 30 40 50 60 70
150 160 170 180 190 200
pF1KSD SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPL
.:. : . .:.:: :...: ::.::::.:::. : . . .:::. .: : ::: .
CCDS66 VQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGG-DDRIGALTHKI
80 90 100 110 120 130
210 220 230 240 250 260
pF1KSD CHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNA
: ....:
CCDS66 THLSTLQVTPCLWLAAGSSMKGLRMRCVKLCWRSWAGSPRTQESTVATSTPSTTSSLHAT
140 150 160 170 180 190
385 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:13:34 2016 done: Thu Nov 3 05:13:35 2016
Total Scan time: 3.000 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]