FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1194, 557 aa
  1>>>pF1KSDA1194 557 - 557 aa - 557 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1758+/-0.00116; mu= 13.4621+/- 0.069
 mean_var=98.5086+/-20.624, 0's: 0 Z-trim(104.2): 138  B-trim: 5 in 1/47
 Lambda= 0.129222
 statistics sampled from 7622 (7785) to 7622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.239), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS4455.1 CNOT6 gene_id:57472|Hs108|chr5          ( 557) 3712 703.4 1.9e-202
CCDS68731.1 CNOT6L gene_id:246175|Hs108|chr4       ( 555) 2974 565.8 4.8e-161


>>CCDS4455.1 CNOT6 gene_id:57472|Hs108|chr5               (557 aa)
 initn: 3712 init1: 3712 opt: 3712  Z-score: 3748.2  bits: 703.4 E(32554): 1.9e-202
Smith-Waterman score: 3712; 100.0% identity (100.0% similar) in 557 aa overlap (1-557:1-557)

               10        20        30        40        50        60
pF1KSD MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLSGTAKRITTEQPPPRSWIMLQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLSGTAKRITTEQPPPRSWIMLQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPDSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPDSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
              490       500       510       520       530       540

              550       
pF1KSD LLPFLPQVNGIHLPGRR
       :::::::::::::::::
CCDS44 LLPFLPQVNGIHLPGRR
              550       

>>CCDS68731.1 CNOT6L gene_id:246175|Hs108|chr4            (555 aa)
 initn: 2852 init1: 973 opt: 2974  Z-score: 3004.7  bits: 565.8 E(32554): 4.8e-161
Smith-Waterman score: 2974; 78.5% identity (92.3% similar) in 557 aa overlap (1-557:6-555)

                    10        20        30        40        50     
pF1KSD      MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTA
            ::::::.::::::.:::::.::.:::::::::::::::.:::::.::::::::::
CCDS68 MRLIGMPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTA
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KSD LHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFE
       :::.:: ::::: :::::::::::::::::.:::::::::::::::: ::::::::::.:
CCDS68 LHLNDNYLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYE
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KSD LGKLFQLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLSGTAKRITTEQPPPRSWI
       ::.::::::::::::::.::::::::.:::::.:::..::::.     .  :: ::: ::
CCDS68 LGRLFQLQTLGLKGNPLSQDILNLYQDPDGTRKLLNFMLDNLA-----VHPEQLPPRPWI
              130       140       150       160            170     

         180       190       200       210       220       230     
pF1KSD MLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADI
        :.: :.  :.: :.:::::::::::::::::::::::::::.::::.:..::..:.:::
CCDS68 TLKERDQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADI
         180       190       200       210       220       230     

         240       250       260       270       280       290     
pF1KSD VSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLV
       .::::::::::...::  ::::::.:::::::::. ::::::::::::::::::::::::
CCDS68 ISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLV
         240       250       260       270       280       290     

         300       310       320       330       340       350     
pF1KSD QKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLI
       :::::::::.:::::.:::::::::::::::::::.::..:: .   . ::  ...:::.
CCDS68 QKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKE-LFGAGMKPIHAADKQLL
         300       310       320       330        340       350    

         360       370       380       390       400       410     
pF1KSD LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNS
       .:::::::::::::::::.:::::.::::::..::: .  .:  .. ..:::::::::::
CCDS68 IVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKAS-SRPGSPTADPNSIPLVLCADLNS
          360       370       380       390        400       410   

         420       430       440       450       460       470     
pF1KSD LPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESG
       :::::::::::.:::  :::::::::::: : ::::.::::...:::::::.:.::::..
CCDS68 LPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENN
           420       430       440       450       460       470   

         480       490       500       510       520       530     
pF1KSD LMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLF
       :::::::::::::.:::::::: ..:.::.::::: .:::::::.::::: ::::::::.
CCDS68 LMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLL
           480       490       500       510       520       530   

         540       550       
pF1KSD AQLELLLPFLPQVNGIHLPGRR
       .::::  :.:: :::.:::.::
CCDS68 TQLELHPPLLPLVNGVHLPNRR
           540       550     




557 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:17:51 2016 done: Thu Nov  3 05:17:52 2016
 Total Scan time:  3.360 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]