Result of FASTA (ccds) for
pF1KSDA1197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1197, 1422 aa
1>>>pF1KSDA1197 1422 - 1422 aa - 1422 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6949+/-0.00124; mu= 0.8008+/- 0.075
mean_var=406.1749+/-83.413, 0's: 0 Z-trim(111.7): 63 B-trim: 0 in 0/54
Lambda= 0.063638
statistics sampled from 12592 (12623) to 12592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.388), width: 16
Scan time: 5.580
The best scores are: opt bits E(32554)
CCDS43175.1 YEATS2 gene_id:55689|Hs108|chr3 (1422) 9260 866.1 0
>>CCDS43175.1 YEATS2 gene_id:55689|Hs108|chr3 (1422 aa)
initn: 9260 init1: 9260 opt: 9260 Z-score: 4613.1 bits: 866.1 E(32554): 0
Smith-Waterman score: 9260; 100.0% identity (100.0% similar) in 1422 aa overlap (1-1422:1-1422)
10 20 30 40 50 60
pF1KSD MSGIKRTIKETDPDYEDVSVALPNKRHKAIENSARDAAVQKIETIIKEQFALEMKNKEHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSGIKRTIKETDPDYEDVSVALPNKRHKAIENSARDAAVQKIETIIKEQFALEMKNKEHE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IEVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGSKTCDTMVFNHPAIKKFLESPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IEVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGSKTCDTMVFNHPAIKKFLESPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEERLSNNMEQRPSRNTGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEERLSNNMEQRPSRNTGRD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD TSRITGSHKTEQRNADLTDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSRITGSHKTEQRNADLTDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCIYPQSSESDISDAPPSLPLTIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCIYPQSSESDISDAPPSLPLTIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD APVKASSPIKQSHEPVPDTSVEKGFPASTEAERHTPFYALPSSLERTPTKMTTSQKVTFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APVKASSPIKQSHEPVPDTSVEKGFPASTEAERHTPFYALPSSLERTPTKMTTSQKVTFC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD STPVHVKQGTAGSVINNPYVIMDKQPGQVIGATTPSTGSPTNKISTASQVSQGTGSPVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STPVHVKQGTAGSVINNPYVIMDKQPGQVIGATTPSTGSPTNKISTASQVSQGTGSPVPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD IHGSSFVTSTVKQEDSLFASMPPLCPIGSHPKVQSPKPITGGLGAFTKVIIKQEPGEAPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IHGSSFVTSTVKQEDSLFASMPPLCPIGSHPKVQSPKPITGGLGAFTKVIIKQEPGEAPH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VPATGAASQSPLPQYVTVKGGHMIAVSPQKQVITPGEGIAQSAKVQPSKVVGVPVGSALP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VPATGAASQSPLPQYVTVKGGHMIAVSPQKQVITPGEGIAQSAKVQPSKVVGVPVGSALP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD STVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD QVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD AILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD GGISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD VISGQKTTLFTQAAHGGQASLMKISDSTLKTVPATSQLSKPGTTMLRVAGGVITTATSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VISGQKTTLFTQAAHGGQASLMKISDSTLKTVPATSQLSKPGTTMLRVAGGVITTATSPA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD VALSANGPAQQSEGMAPVSSSTVSSVTKTSGQQQVCVSQATVGTCKAATPTVVSATSLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VALSANGPAQQSEGMAPVSSSTVSSVTKTSGQQQVCVSQATVGTCKAATPTVVSATSLVP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD TPNPISGKATVSGLLKIHSSQSSPQQAVLTIPSQLKPLSVNTSGGVQTILMPVNKVVQSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPNPISGKATVSGLLKIHSSQSSPQQAVLTIPSQLKPLSVNTSGGVQTILMPVNKVVQSF
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD STSKPPAILPVAAPTPVVPSSAPAAVAKVKTEPETPGPSCLSQEGQTAVKTEESSELGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STSKPPAILPVAAPTPVVPSSAPAAVAKVKTEPETPGPSCLSQEGQTAVKTEESSELGNY
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD VIKIDHLETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VIKIDHLETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMT
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD MRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD PECPSSFSSADNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIKKEQEEKQEEVKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PECPSSFSSADNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIKKEQEEKQEEVKF
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD YLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGY
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420
pF1KSD QTASHNRIPKEITVSNIHQAICNIPFLDFLTNKHMGILNEDQ
::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTASHNRIPKEITVSNIHQAICNIPFLDFLTNKHMGILNEDQ
1390 1400 1410 1420
1422 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:19:17 2016 done: Thu Nov 3 05:19:18 2016
Total Scan time: 5.580 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]