Result of FASTA (ccds) for
pF1KSDA1219
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1219, 1491 aa
1>>>pF1KSDA1219 1491 - 1491 aa - 1491 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5290+/-0.000921; mu= 17.8501+/- 0.056
mean_var=97.3189+/-19.078, 0's: 0 Z-trim(107.5): 26 B-trim: 4 in 1/51
Lambda= 0.130010
statistics sampled from 9613 (9622) to 9613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.296), width: 16
Scan time: 4.860
The best scores are: opt bits E(32554)
CCDS63272.1 RALGAPB gene_id:57148|Hs108|chr20 (1491) 9942 1876.1 0
CCDS13305.1 RALGAPB gene_id:57148|Hs108|chr20 (1494) 9906 1869.4 0
>>CCDS63272.1 RALGAPB gene_id:57148|Hs108|chr20 (1491 aa)
initn: 9942 init1: 9942 opt: 9942 Z-score: 10071.1 bits: 1876.1 E(32554): 0
Smith-Waterman score: 9942; 100.0% identity (100.0% similar) in 1491 aa overlap (1-1491:1-1491)
10 20 30 40 50 60
pF1KSD MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KEVKWTMEVICYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPVIKEPNQYVQTIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KEVKWTMEVICYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPVIKEPNQYVQTIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KHLQNLFVPRQEQGSSQIRLCLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KHLQNLFVPRQEQGSSQIRLCLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPYWKTAKEMVANWRHHPAVVEQWSKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPYWKTAKEMVANWRHHPAVVEQWSKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ICALTSRLLRFTYGPSFPAFKVPDEDASLIPPEMDNECVAQTWFRFLHMLSNPVDLSNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ICALTSRLLRFTYGPSFPAFKVPDEDASLIPPEMDNECVAQTWFRFLHMLSNPVDLSNPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EFRRKGSQMSTDTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EFRRKGSQMSTDTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FYMLLIQGLQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FYMLLIQGLQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FKSYVNPTELRRSSINILLSLLPLPHHFGTVKSEVVLEGKFSNDDSSSYDKPITFLSLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FKSYVNPTELRRSSINILLSLLPLPHHFGTVKSEVVLEGKFSNDDSSSYDKPITFLSLKL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD RLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIGCQMEMGGGENNLKSHSRTNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIGCQMEMGGGENNLKSHSRTNS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD GISSASGGSTEPTTPDSERPAQALLRDYDSAAGLLIRSIHLVTQRLNSQWRQDMSISLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GISSASGGSTEPTTPDSERPAQALLRDYDSAAGLLIRSIHLVTQRLNSQWRQDMSISLAA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD LELLSGLAKVKVMVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCLCVWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LELLSGLAKVKVMVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCLCVWL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD TEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEVKYKGDKEPNPASMRVKDAAEATLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEVKYKGDKEPNPASMRVKDAAEATLT
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD CIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLEQPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 CIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLEQPLG
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD NEQNDFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFKYSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NEQNDFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFKYSVK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD HRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEIHLEQQSEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEIHLEQQSEEEL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD QKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSLEALKEPANSRLPPHLIALDSTIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSLEALKEPANSRLPPHLIALDSTIPG
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD FFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQPHFLEFLLSLGWSVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQPHFLEFLLSLGWSVD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD VGRHPGWTGHVSTSWSINCCDDGEGSQQEEVISSEDIGASIFNGQKKVLYYADALTEIAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VGRHPGWTGHVSTSWSINCCDDGEGSQQEEVISSEDIGASIFNGQKKVLYYADALTEIAF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD VVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPSLTLELFPNHTDNLNSSQRLSPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPSLTLELFPNHTDNLNSSQRLSPSS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD RMRKLPQGRPVPPLGPETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTSLRST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RMRKLPQGRPVPPLGPETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTSLRST
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KSD TLEKEVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVINICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLEKEVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVINICR
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490
pF1KSD RKRLESDSYSPPHVRRKQKITDIVNKYRNKQLEPEFYTSLFQEVGLKNCSS
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RKRLESDSYSPPHVRRKQKITDIVNKYRNKQLEPEFYTSLFQEVGLKNCSS
1450 1460 1470 1480 1490
>>CCDS13305.1 RALGAPB gene_id:57148|Hs108|chr20 (1494 aa)
initn: 8243 init1: 4993 opt: 9906 Z-score: 10034.6 bits: 1869.4 E(32554): 0
Smith-Waterman score: 9906; 99.7% identity (99.7% similar) in 1495 aa overlap (1-1491:1-1494)
10 20 30 40 50 60
pF1KSD MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KEVKWTMEVICYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPVIKEPNQYVQTIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEVKWTMEVICYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPVIKEPNQYVQTIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KHLQNLFVPRQEQGSSQIRLCLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KHLQNLFVPRQEQGSSQIRLCLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPYWKTAKEMVANWRHHPAVVEQWSKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPYWKTAKEMVANWRHHPAVVEQWSKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ICALTSRLLRFTYGPSFPAFKVPDEDASLIPPEMDNECVAQTWFRFLHMLSNPVDLSNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ICALTSRLLRFTYGPSFPAFKVPDEDASLIPPEMDNECVAQTWFRFLHMLSNPVDLSNPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EFRRKGSQMSTDTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EFRRKGSQMSTDTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FYMLLIQGLQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FYMLLIQGLQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FKSYVNPTELRRSSINILLSLLPLPHHFGTVKSEVVLEGKFSNDDSSSYDKPITFLSLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKSYVNPTELRRSSINILLSLLPLPHHFGTVKSEVVLEGKFSNDDSSSYDKPITFLSLKL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD RLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIGCQMEMGGGENNLKSHSRTNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIGCQMEMGGGENNLKSHSRTNS
670 680 690 700 710 720
730 740 750 760 770
pF1KSD GISSASGGSTEPTTPDSERPAQALLRDY----DSAAGLLIRSIHLVTQRLNSQWRQDMSI
:::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS13 GISSASGGSTEPTTPDSERPAQALLRDYALNTDSAAGLLIRSIHLVTQRLNSQWRQDMSI
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD SLAALELLSGLAKVKVMVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLAALELLSGLAKVKVMVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD CVWLTEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEVKYKGDKEPNPASMRVKDAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CVWLTEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEVKYKGDKEPNPASMRVKDAAE
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD ATLTCIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ATLTCIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLE
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KSD QPLGNEQNDFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPLGNEQNDFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFK
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD YSVKHRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEIHLEQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YSVKHRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEIHLEQQS
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KSD EEELQKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSLEALKEPANSRLPPHLIALDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEELQKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSLEALKEPANSRLPPHLIALDS
1090 1100 1110 1120 1130 1140
1140 1150 1160 1170 1180 1190
pF1KSD TIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQPHFLEFLLSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQPHFLEFLLSLG
1150 1160 1170 1180 1190 1200
1200 1210 1220 1230 1240 1250
pF1KSD WSVDVGRHPGWTGHVSTSWSINCCDDGEGSQQEEVISSEDIGASIFNGQKKVLYYADALT
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS13 WSVDVGRHPGWTGHVSTSWSINCCDDGEGSQQE-VISSEDIGASIFNGQKKVLYYADALT
1210 1220 1230 1240 1250
1260 1270 1280 1290 1300 1310
pF1KSD EIAFVVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPSLTLELFPNHTDNLNSSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EIAFVVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPSLTLELFPNHTDNLNSSQRL
1260 1270 1280 1290 1300 1310
1320 1330 1340 1350 1360 1370
pF1KSD SPSSRMRKLPQGRPVPPLGPETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPSSRMRKLPQGRPVPPLGPETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTS
1320 1330 1340 1350 1360 1370
1380 1390 1400 1410 1420 1430
pF1KSD LRSTTLEKEVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRSTTLEKEVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVI
1380 1390 1400 1410 1420 1430
1440 1450 1460 1470 1480 1490
pF1KSD NICRRKRLESDSYSPPHVRRKQKITDIVNKYRNKQLEPEFYTSLFQEVGLKNCSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NICRRKRLESDSYSPPHVRRKQKITDIVNKYRNKQLEPEFYTSLFQEVGLKNCSS
1440 1450 1460 1470 1480 1490
1491 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:02:44 2016 done: Thu Nov 3 19:02:45 2016
Total Scan time: 4.860 Total Display time: 0.220
Function used was FASTA [36.3.4 Apr, 2011]