Result of FASTA (ccds) for
pF1KSDA1229
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1229, 636 aa
1>>>pF1KSDA1229 636 - 636 aa - 636 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0774+/-0.00173; mu= -12.2122+/- 0.101
mean_var=371.1006+/-78.618, 0's: 0 Z-trim(105.2): 118 B-trim: 72 in 2/50
Lambda= 0.066578
statistics sampled from 8226 (8296) to 8226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.255), width: 16
Scan time: 3.530
The best scores are: opt bits E(32554)
CCDS41354.2 ODF2L gene_id:57489|Hs108|chr1 ( 636) 3993 398.6 1.3e-110
CCDS53339.1 ODF2L gene_id:57489|Hs108|chr1 ( 591) 2274 233.5 6.2e-61
CCDS30763.2 ODF2L gene_id:57489|Hs108|chr1 ( 620) 2205 226.9 6.4e-59
>>CCDS41354.2 ODF2L gene_id:57489|Hs108|chr1 (636 aa)
initn: 3993 init1: 3993 opt: 3993 Z-score: 2099.3 bits: 398.6 E(32554): 1.3e-110
Smith-Waterman score: 3993; 99.8% identity (100.0% similar) in 636 aa overlap (1-636:1-636)
10 20 30 40 50 60
pF1KSD MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEHENETLNLENTKLKLRFPCRIT
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS41 QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEYENETLNLENTKLKLRFPCRIT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ESKNMNILIVLDMLCYISSEKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESKNMNILIVLDMLCYISSEKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD ECQESLQCCKGKCADQEHTIRELQGQVDGNHNLLTKLSLEEENCLIQLKCENLQQKLEQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ECQESLQCCKGKCADQEHTIRELQGQVDGNHNLLTKLSLEEENCLIQLKCENLQQKLEQM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEKMSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEKMSSR
550 560 570 580 590 600
610 620 630
pF1KSD ESALQIKILDLETELRKKNEEQNQLVCKMNSDPETP
::::::::::::::::::::::::::::::::::::
CCDS41 ESALQIKILDLETELRKKNEEQNQLVCKMNSDPETP
610 620 630
>>CCDS53339.1 ODF2L gene_id:57489|Hs108|chr1 (591 aa)
initn: 2949 init1: 2180 opt: 2274 Z-score: 1207.4 bits: 233.5 E(32554): 6.2e-61
Smith-Waterman score: 3207; 86.8% identity (87.0% similar) in 631 aa overlap (1-631:1-549)
10 20 30 40 50 60
pF1KSD MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEHENETLNLENTKLKLRFPCRIT
::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS53 QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEYENETLNLENTKLK--------
310 320 330 340 350
370 380 390 400 410 420
pF1KSD ESKNMNILIVLDMLCYISSEKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
:::::::::::::::::::::::::::::::::::::::
CCDS53 ---------------------TTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
360 370 380 390
430 440 450 460 470 480
pF1KSD KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLH
:::::::::::::::::::::::::::::::::
CCDS53 KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEK---------------------------
400 410 420
490 500 510 520 530 540
pF1KSD ECQESLQCCKGKCADQEHTIRELQGQVDGNHNLLTKLSLEEENCLIQLKCENLQQKLEQM
::::::::::::::::::::::::::::::::::
CCDS53 --------------------------VDGNHNLLTKLSLEEENCLIQLKCENLQQKLEQM
430 440 450
550 560 570 580 590 600
pF1KSD DAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEKMSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEKMSSR
460 470 480 490 500 510
610 620 630
pF1KSD ESALQIKILDLETELRKKNEEQNQLVCKMNSDPETP
:::::::::::::::::::::::::::::::
CCDS53 ESALQIKILDLETELRKKNEEQNQLVCKMNSKAQHQEVCLKEVQNSLEKSENQNESIKNY
520 530 540 550 560 570
CCDS53 LQFLKTSYVTMFE
580 590
>>CCDS30763.2 ODF2L gene_id:57489|Hs108|chr1 (620 aa)
initn: 3784 init1: 2180 opt: 2205 Z-score: 1171.3 bits: 226.9 E(32554): 6.4e-59
Smith-Waterman score: 3698; 93.4% identity (93.5% similar) in 649 aa overlap (1-636:1-620)
10 20 30 40 50 60
pF1KSD MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 THSVELLLPLFKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DYKQTGDNLSSMLLENLTDNESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SVKVVHERLQIQIHKREAENDKLKEYVKSLETKIAKWNLQSRMNKNEAIVMKEASRQKTV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISASNAWKSHYEKIVIEKTELEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEHENETLNLENTKLKLRFPCRIT
::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS30 QIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEYENETLNLENTKLK--------
310 320 330 340 350
370 380 390 400 410 420
pF1KSD ESKNMNILIVLDMLCYISSEKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
:::::::::::::::::::::::::::::::::::::::
CCDS30 ---------------------TTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
360 370 380 390
430 440 450 460 470 480
pF1KSD KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLH
400 410 420 430 440 450
490 500 510 520
pF1KSD ECQESLQCCKGKCADQEHTIRELQGQ-------------VDGNHNLLTKLSLEEENCLIQ
:::::::::::::::::::::::::: :::::::::::::::::::::
CCDS30 ECQESLQCCKGKCADQEHTIRELQGQILKQWEEYSVLAWVDGNHNLLTKLSLEEENCLIQ
460 470 480 490 500 510
530 540 550 560 570 580
pF1KSD LKCENLQQKLEQMDAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LKCENLQQKLEQMDAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGR
520 530 540 550 560 570
590 600 610 620 630
pF1KSD QKVAEEIEKMSSRESALQIKILDLETELRKKNEEQNQLVCKMNSDPETP
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QKVAEEIEKMSSRESALQIKILDLETELRKKNEEQNQLVCKMNSDPETP
580 590 600 610 620
636 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:29:21 2016 done: Thu Nov 3 05:29:21 2016
Total Scan time: 3.530 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]