FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1257, 409 aa
  1>>>pF1KSDA1257 409 - 409 aa - 409 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9887+/-0.000869; mu= 9.3723+/- 0.052
 mean_var=97.7336+/-19.202, 0's: 0 Z-trim(108.2): 10  B-trim: 0 in 0/52
 Lambda= 0.129734
 statistics sampled from 10086 (10088) to 10086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.31), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS46905.1 KIAA1257 gene_id:57501|Hs108|chr3      ( 409) 2708 517.1 1.2e-146


>>CCDS46905.1 KIAA1257 gene_id:57501|Hs108|chr3           (409 aa)
 initn: 2708 init1: 2708 opt: 2708  Z-score: 2746.4  bits: 517.1 E(32554): 1.2e-146
Smith-Waterman score: 2708; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)

               10        20        30        40        50        60
pF1KSD MSLHAWEWEEDPASIEPISSITSFYQSTSECDVEEHLKAKARAQESDSDRPCSSIESSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSLHAWEWEEDPASIEPISSITSFYQSTSECDVEEHLKAKARAQESDSDRPCSSIESSSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PASTFSSDVPHVVPCKFTISLAFPVNMGQKGKYASLIEKYKKHPKTDSSVTKMRRFYHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PASTFSSDVPHVVPCKFTISLAFPVNMGQKGKYASLIEKYKKHPKTDSSVTKMRRFYHIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YFLLPDDEEPKKVDILLFPMVAKVFLESGVKTVKPWHEGDKAWVSWEQTFNITVTKELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YFLLPDDEEPKKVDILLFPMVAKVFLESGVKTVKPWHEGDKAWVSWEQTFNITVTKELLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KINFHKITLRLWNTKDKMSRKVRYYRLKTAGFTDDVGAFHKSEVRHLVLNQRKLSEQGIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KINFHKITLRLWNTKDKMSRKVRYYRLKTAGFTDDVGAFHKSEVRHLVLNQRKLSEQGIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NTNIVREESNQEHPPGKQEKTEKHPKSLQGSHQAEPETSSKNSEEYEKSLKMDDSSTIQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NTNIVREESNQEHPPGKQEKTEKHPKSLQGSHQAEPETSSKNSEEYEKSLKMDDSSTIQW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SVSRTPTISLAGASMMEIKELIESESLSSLTNILDRQRSQIKGKDSEGRRKIQRRHKKPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVSRTPTISLAGASMMEIKELIESESLSSLTNILDRQRSQIKGKDSEGRRKIQRRHKKPL
              310       320       330       340       350       360

              370       380       390       400         
pF1KSD AEEEADPTLTGPRKQSAFSIQLAVMPLLAGTHCLPCSQQLLLVLWPERP
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEEEADPTLTGPRKQSAFSIQLAVMPLLAGTHCLPCSQQLLLVLWPERP
              370       380       390       400         




409 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:35:35 2016 done: Thu Nov  3 05:35:36 2016
 Total Scan time:  3.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]