FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1258, 454 aa
  1>>>pF1KSDA1258 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1756+/-0.00106; mu= 11.8746+/- 0.063
 mean_var=58.5832+/-11.582, 0's: 0 Z-trim(101.4): 23  B-trim: 0 in 0/49
 Lambda= 0.167567
 statistics sampled from 6478 (6485) to 6478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.199), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS6641.1 GDA gene_id:9615|Hs108|chr9             ( 454) 2984 730.2  1e-210
CCDS56576.1 GDA gene_id:9615|Hs108|chr9            ( 471) 2984 730.2 1.1e-210
CCDS56577.1 GDA gene_id:9615|Hs108|chr9            ( 380) 2454 602.1 3.2e-172


>>CCDS6641.1 GDA gene_id:9615|Hs108|chr9                  (454 aa)
 initn: 2984 init1: 2984 opt: 2984  Z-score: 3896.3  bits: 730.2 E(32554): 1e-210
Smith-Waterman score: 2984; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KSD MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD CPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 CPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDI
              370       380       390       400       410       420

              430       440       450    
pF1KSD SEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV
       ::::::::::::::::::::::::::::::::::
CCDS66 SEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV
              430       440       450    

>>CCDS56576.1 GDA gene_id:9615|Hs108|chr9                 (471 aa)
 initn: 2984 init1: 2984 opt: 2984  Z-score: 3896.0  bits: 730.2 E(32554): 1.1e-210
Smith-Waterman score: 2984; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KSD MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD CPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDI
              370       380       390       400       410       420

              430       440       450                     
pF1KSD SEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV                 
       ::::::::::::::::::::::::::::::::::                 
CCDS56 SEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSVKETIHLPASSPHPPPFP
              430       440       450       460       470 

>>CCDS56577.1 GDA gene_id:9615|Hs108|chr9                 (380 aa)
 initn: 2454 init1: 2454 opt: 2454  Z-score: 3205.3  bits: 602.1 E(32554): 3.2e-172
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 380 aa overlap (75-454:1-380)

           50        60        70        80        90       100    
pF1KSD LEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLT
                                     ::::::::::::::::::::::::::::::
CCDS56                               MPGLVDTHIHASQYSFAGSSIDLPLLEWLT
                                             10        20        30

          110       120       130       140       150       160    
pF1KSD KYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRA
               40        50        60        70        80        90

          170       180       190       200       210       220    
pF1KSD FVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMG
              100       110       120       130       140       150

          230       240       250       260       270       280    
pF1KSD ELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS
              160       170       180       190       200       210

          290       300       310       320       330       340    
pF1KSD AEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIR
              220       230       240       250       260       270

          350       360       370       380       390       400    
pF1KSD RAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKA
              280       290       300       310       320       330

          410       420       430       440       450    
pF1KSD SDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV
              340       350       360       370       380




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:36:12 2016 done: Thu Nov  3 05:36:12 2016
 Total Scan time:  2.860 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]