(Circular) (Six-base) MAPSORT of: pF1KSDA1276.seq Check: 5000 from: 1 to: 6317 pF1KSDA1276 6317 bp With 182 enzymes: SgfI * June 20, 2008 10:35 .. AccI GT'mk_AC Cuts at: 3190 3355 3190 Size: 165 6152 Acc65I G'GTAC_C Cuts at: 3333 3333 Size: 6317 AclI AA'CG_TT Cuts at: 6157 6157 Size: 6317 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1003 1024 1808 2830 2896 4142 4574 5321 5589 Size: 21 784 1022 66 1246 432 747 268 Cuts at: 5589 1003 Size: 1731 Fragments arranged by size: 1731 1246 1022 784 747 432 268 66 21 AflII C'TTAA_G Cuts at: 1036 1036 Size: 6317 AflIII A'CryG_T Cuts at: 3669 4773 5750 3669 Size: 1104 977 4236 Fragments arranged by size: 4236 1104 977 AgeI A'CCGG_T Cuts at: 4705 4705 Size: 6317 AleI CACnn'nnGTG Cuts at: 265 265 Size: 6317 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1172 1306 2366 1172 Size: 134 1060 5123 Fragments arranged by size: 5123 1060 134 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3052 3084 3052 Size: 32 6285 AlwNI CAG_nnn'CTG Cuts at: 435 618 732 753 855 1002 1023 1666 1971 Size: 183 114 21 102 147 21 643 305 Cuts at: 1971 2307 2334 3622 5189 435 Size: 336 27 1288 1567 1563 Fragments arranged by size: 1567 1563 1288 643 336 305 183 147 114 102 27 21 21 ApaI G_GGCC'C Cuts at: 697 697 Size: 6317 ApaLI G'TGCA_C Cuts at: 1980 5087 1980 Size: 3107 3210 ApoI r'AATT_y Cuts at: 1056 1599 1630 3321 5670 5926 1056 Size: 543 31 1691 2349 256 1447 Fragments arranged by size: 2349 1691 1447 543 256 31 AseI AT'TA_AT Cuts at: 20 3113 20 Size: 3093 3224 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6317 AvaI C'yCGr_G Cuts at: 2101 2484 2836 2988 3337 2101 Size: 383 352 152 349 5081 Fragments arranged by size: 5081 383 352 349 152 BamHI G'GATC_C Cuts at: 1722 3342 1722 Size: 1620 4697 BanI G'GyrC_C Cuts at: 193 2363 3333 3747 3995 4030 193 Size: 2170 970 414 248 35 2480 Fragments arranged by size: 2480 2170 970 414 248 35 BanII G_rGCy'C Cuts at: 178 347 587 667 697 1870 2060 2124 2237 Size: 169 240 80 30 1173 190 64 113 Cuts at: 2237 2406 2546 3268 3331 4361 178 Size: 169 140 722 63 1030 2134 Fragments arranged by size: 2134 1173 1030 722 240 190 169 169 140 113 80 64 63 30 BbeI G_GCGC'C Cuts at: 197 3751 3999 197 Size: 3554 248 2515 Fragments arranged by size: 3554 2515 248 BbsI GAAGACnn'nnnn_ Cuts at: 1171 1355 1430 1171 Size: 184 75 6058 Fragments arranged by size: 6058 184 75 BbvCI CC'TCA_GC Cuts at: 302 526 1235 1667 2398 302 Size: 224 709 432 731 4221 Fragments arranged by size: 4221 731 709 432 224 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 231 265 1117 1151 231 Size: 34 852 34 5397 Fragments arranged by size: 5397 852 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4215 4976 6317 4215 Size: 761 1341 4215 Fragments arranged by size: 4215 1341 761 BclI T'GATC_A Cuts at: 3837 3837 Size: 6317 BglI GCCn_nnn'nGGC Cuts at: 775 922 2495 2674 2731 2773 775 Size: 147 1573 179 57 42 4319 Fragments arranged by size: 4319 1573 179 147 57 42 BglII A'GATC_T Cuts at: 3832 5869 3832 Size: 2037 4280 BlpI GC'TnA_GC Cuts at: 754 3429 754 Size: 2675 3642 Bme1580I G_kGCm'C Cuts at: 697 1267 1984 2366 2751 3038 3942 4035 5091 Size: 570 717 382 385 287 904 93 1056 Cuts at: 5091 697 Size: 1923 Fragments arranged by size: 1923 1056 904 717 570 385 382 287 93 BmgBI CAC'GTC Cuts at: 3033 3033 Size: 6317 BmrI ACTGGGnnnn_n' Cuts at: 1873 2936 3529 3610 3945 6089 1873 Size: 1063 593 81 335 2144 2101 Fragments arranged by size: 2144 2101 1063 593 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 510 4684 510 Size: 4174 2143 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 222 331 457 469 526 552 595 601 973 Size: 109 126 12 57 26 43 6 372 Cuts at: 973 1579 1732 1993 2044 2053 2155 2188 2221 Size: 606 153 261 51 9 102 33 33 Cuts at: 2221 2251 2551 2671 2746 222 Size: 30 300 120 75 3793 Fragments arranged by size: 3793 606 372 300 261 153 126 120 109 102 75 57 51 43 33 33 30 26 12 9 6 Bpu10I CC'TnA_GC Cuts at: 302 526 926 1235 1667 2398 302 Size: 224 400 309 432 731 4221 Fragments arranged by size: 4221 731 432 400 309 224 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 571 1240 1630 1819 1999 2143 3493 4372 4864 Size: 669 390 189 180 144 1350 879 492 Cuts at: 4864 5162 571 Size: 298 1726 Fragments arranged by size: 1726 1350 879 669 492 390 298 189 180 144 BsaI GGTCTCn'nnnn_ Cuts at: 358 941 1708 1956 2059 2627 6021 358 Size: 583 767 248 103 568 3394 654 Fragments arranged by size: 3394 767 654 583 568 248 103 BsaAI yAC'GTr Cuts at: 231 3309 3670 231 Size: 3078 361 2878 Fragments arranged by size: 3078 2878 361 BsaBI GATnn'nnATC Cuts at: 6 3831 5868 6 Size: 3825 2037 455 Fragments arranged by size: 3825 2037 455 BsaHI Gr'CG_yC Cuts at: 194 3748 3996 4698 6194 194 Size: 3554 248 702 1496 317 Fragments arranged by size: 3554 1496 702 317 248 BsaWI w'CCGG_w Cuts at: 932 2708 2803 2957 3506 4027 4705 4979 5126 Size: 1776 95 154 549 521 678 274 147 Cuts at: 5126 5537 932 Size: 411 1712 Fragments arranged by size: 1776 1712 678 549 521 411 274 154 147 95 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 862 892 2219 2249 3052 3082 862 Size: 30 1327 30 803 30 4097 Fragments arranged by size: 4097 1327 803 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 355 418 487 618 796 1396 1772 1777 1924 Size: 63 69 131 178 600 376 5 147 Cuts at: 1924 2290 2485 2566 2668 355 Size: 366 195 81 102 4004 Fragments arranged by size: 4004 600 376 366 195 178 147 131 102 81 69 63 5 BseYI C'CCAG_C Cuts at: 254 2096 2515 2669 2756 3037 3139 3157 3251 Size: 1842 419 154 87 281 102 18 94 Cuts at: 3251 3742 4500 5077 5573 254 Size: 491 758 577 496 998 Fragments arranged by size: 1842 998 758 577 496 491 419 281 154 102 94 87 18 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 519 745 1051 519 Size: 226 306 5785 Fragments arranged by size: 5785 306 226 BsiEI CG_ry'CG Cuts at: 104 3859 3905 5113 104 Size: 3755 46 1208 1308 Fragments arranged by size: 3755 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 347 545 587 959 1984 2060 2237 3331 4109 Size: 198 42 372 1025 76 177 1094 778 Cuts at: 4109 4299 5091 347 Size: 190 792 1573 Fragments arranged by size: 1573 1094 1025 792 778 372 198 190 177 76 42 BsmI GAATG_Cn' Cuts at: 357 1706 2935 357 Size: 1349 1229 3739 Fragments arranged by size: 3739 1349 1229 BsmBI CGTCTCn'nnnn_ Cuts at: 502 502 Size: 6317 Bsp1286I G_dGCh'C Cuts at: 178 347 545 587 667 697 959 1267 1870 Size: 169 198 42 80 30 262 308 603 Cuts at: 1870 1984 2060 2124 2237 2366 2406 2546 2751 Size: 114 76 64 113 129 40 140 205 Cuts at: 2751 3038 3268 3331 3942 4035 4109 4299 4361 Size: 287 230 63 611 93 74 190 62 Cuts at: 4361 5091 178 Size: 730 1404 Fragments arranged by size: 1404 730 611 603 308 287 262 230 205 198 190 169 140 129 114 113 93 80 76 74 64 63 62 42 40 30 BspEI T'CCGG_A Cuts at: 932 2803 5537 932 Size: 1871 2734 1712 Fragments arranged by size: 2734 1871 1712 BspHI T'CATG_A Cuts at: 5493 5493 Size: 6317 BspMI ACCTGCnnnn'nnnn_ Cuts at: 2012 2633 3367 3581 3883 4264 2012 Size: 621 734 214 302 381 4065 Fragments arranged by size: 4065 734 621 381 302 214 BsrBI CCG'CTC Cuts at: 50 4609 4663 6147 6312 50 Size: 4559 54 1484 165 55 Fragments arranged by size: 4559 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 4229 4229 Size: 6317 BsrFI r'CCGG_y Cuts at: 196 647 1219 2494 4315 4496 4705 196 Size: 451 572 1275 1821 181 209 1808 Fragments arranged by size: 1821 1808 1275 572 451 209 181 BssHII G'CGCG_C Cuts at: 2589 2589 Size: 6317 BssSI C'ACGA_G Cuts at: 495 628 4588 4946 495 Size: 133 3960 358 1866 Fragments arranged by size: 3960 1866 358 133 BstAPI GCAn_nnn'nTGC Cuts at: 732 831 2268 2307 3205 3694 732 Size: 99 1437 39 898 489 3355 Fragments arranged by size: 3355 1437 898 489 99 39 BstBI TT'CG_AA Cuts at: 110 4678 110 Size: 4568 1749 BstXI CCAn_nnnn'nTGG Cuts at: 2685 3045 2685 Size: 360 5957 BstYI r'GATC_y Cuts at: 1 1722 2207 3342 3809 3832 4167 4413 5425 Size: 1721 485 1135 467 23 335 246 1012 Cuts at: 5425 5511 5523 5869 1 Size: 86 12 346 449 Fragments arranged by size: 1721 1135 1012 485 467 449 346 335 246 86 23 12 BtgI C'CryG_G Cuts at: 125 1445 1472 2726 125 Size: 1320 27 1254 3716 Fragments arranged by size: 3716 1320 1254 27 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4267 4448 4611 4267 Size: 181 163 5973 Fragments arranged by size: 5973 181 163 BtsI GCAGTG_nn' Cuts at: 868 1073 1698 1809 1984 2383 2692 3560 868 Size: 205 625 111 175 399 309 868 3625 Fragments arranged by size: 3625 868 625 399 309 205 175 111 DraI TTT'AAA Cuts at: 3316 3316 Size: 6317 DraIII CAC_nnn'GTG Cuts at: 1446 1446 Size: 6317 DrdI GACnn_nn'nnGTC Cuts at: 4023 4881 4023 Size: 858 5459 EaeI y'GGCC_r Cuts at: 2856 3165 3902 4076 4467 4494 5839 2856 Size: 309 737 174 391 27 1345 3334 Fragments arranged by size: 3334 1345 737 391 309 174 27 EagI C'GGCC_G Cuts at: 3902 3902 Size: 6317 EarI CTCTTCn'nnn_ Cuts at: 454 1196 1373 1562 2906 4340 4550 454 Size: 742 177 189 1344 1434 210 2221 Fragments arranged by size: 2221 1434 1344 742 210 189 177 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 4525 4835 4981 6127 4525 Size: 310 146 1146 4715 Fragments arranged by size: 4715 1146 310 146 EcoICRI GAG'CTC Cuts at: 345 585 2058 2235 3329 345 Size: 240 1473 177 1094 3333 Fragments arranged by size: 3333 1473 1094 240 177 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 222 331 457 469 526 552 595 601 973 Size: 109 126 12 57 26 43 6 372 Cuts at: 973 1003 1024 1579 1732 1808 1993 2044 2053 Size: 30 21 555 153 76 185 51 9 Cuts at: 2053 2155 2188 2221 2251 2551 2671 2746 2830 Size: 102 33 33 30 300 120 75 84 Cuts at: 2830 2896 4142 4574 5321 5589 222 Size: 66 1246 432 747 268 950 Fragments arranged by size: 1246 950 747 555 432 372 300 268 185 153 126 120 109 102 84 76 75 66 57 51 43 33 33 30 30 26 21 12 9 6 EcoNI CCTnn'n_nnAGG Cuts at: 498 718 801 498 Size: 220 83 6014 Fragments arranged by size: 6014 220 83 EcoO109I rG'GnC_Cy Cuts at: 432 693 711 852 2001 2304 2841 3215 3456 Size: 261 18 141 1149 303 537 374 241 Cuts at: 3456 432 Size: 3293 Fragments arranged by size: 3293 1149 537 374 303 261 241 141 18 EcoRI G'AATT_C Cuts at: 1056 1599 3321 1056 Size: 543 1722 4052 Fragments arranged by size: 4052 1722 543 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1369 4336 1369 Size: 2967 3350 FspI TGC'GCA Cuts at: 399 2128 4098 399 Size: 1729 1970 2618 Fragments arranged by size: 2618 1970 1729 HaeII r_GCGC'y Cuts at: 197 322 446 481 2513 3751 3999 5021 6000 Size: 125 124 35 2032 1238 248 1022 979 Cuts at: 6000 197 Size: 514 Fragments arranged by size: 2032 1238 1022 979 514 248 125 124 35 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 862 894 1707 1739 1873 1905 2219 2251 2528 Size: 32 813 32 134 32 314 32 277 Cuts at: 2528 2560 2876 2908 3081 3113 4159 4189 4191 Size: 32 316 32 173 32 1046 30 2 Cuts at: 4191 4221 862 Size: 30 2958 Fragments arranged by size: 2958 1046 813 316 314 277 173 134 32 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3356 3356 Size: 6317 KasI G'GCGC_C Cuts at: 193 3747 3995 193 Size: 3554 248 2515 Fragments arranged by size: 3554 2515 248 KpnI G_GTAC'C Cuts at: 3337 3337 Size: 6317 MluI A'CGCG_T Cuts at: 5750 5750 Size: 6317 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 659 860 1499 1662 2235 2318 4988 5172 659 Size: 201 639 163 573 83 2670 184 1804 Fragments arranged by size: 2670 1804 639 573 201 184 163 83 MscI TGG'CCA Cuts at: 4078 4078 Size: 6317 MslI CAynn'nnrTG Cuts at: 265 1025 1288 4306 4433 265 Size: 760 263 3018 127 2149 Fragments arranged by size: 3018 2149 760 263 127 MspA1I CmG'CkG Cuts at: 729 753 1560 1786 2673 3161 3428 3742 4102 Size: 24 807 226 887 488 267 314 360 Cuts at: 4102 5115 5360 729 Size: 1013 245 1686 Fragments arranged by size: 1686 1013 887 807 488 360 314 267 245 226 24 NaeI GCC'GGC Cuts at: 198 649 1221 2496 4498 198 Size: 451 572 1275 2002 2017 Fragments arranged by size: 2017 2002 1275 572 451 NarI GG'CG_CC Cuts at: 194 3748 3996 194 Size: 3554 248 2515 Fragments arranged by size: 3554 2515 248 NcoI C'CATG_G Cuts at: 125 2726 125 Size: 2601 3716 NgoMIV G'CCGG_C Cuts at: 196 647 1219 2494 4496 196 Size: 451 572 1275 2002 2017 Fragments arranged by size: 2017 2002 1275 572 451 NspI r_CATG'y Cuts at: 2133 3370 3870 4777 2133 Size: 1237 500 907 3673 Fragments arranged by size: 3673 1237 907 500 PciI A'CATG_T Cuts at: 4773 4773 Size: 6317 PflMI CCAn_nnn'nTGG Cuts at: 435 2244 435 Size: 1809 4508 PfoI T'CCnGG_A Cuts at: 905 2060 2436 2567 2648 3106 905 Size: 1155 376 131 81 458 4116 Fragments arranged by size: 4116 1155 458 376 131 81 PmeI GTTT'AAAC Cuts at: 3316 3316 Size: 6317 PmlI CAC'GTG Cuts at: 231 231 Size: 6317 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3052 3084 5456 5488 3052 Size: 32 2372 32 3881 Fragments arranged by size: 3881 2372 32 32 PpuMI rG'GwC_Cy Cuts at: 711 2001 2841 3215 711 Size: 1290 840 374 3813 Fragments arranged by size: 3813 1290 840 374 PspOMI G'GGCC_C Cuts at: 693 693 Size: 6317 PspXI vC'TCGA_Gb Cuts at: 2101 2101 Size: 6317 PstI C_TGCA'G Cuts at: 386 458 791 923 1130 1499 1705 2009 2051 Size: 72 333 132 207 369 206 304 42 Cuts at: 2051 2273 2390 2867 3364 4049 386 Size: 222 117 477 497 685 2654 Fragments arranged by size: 2654 685 497 477 369 333 304 222 207 206 132 117 72 42 PvuI CG_AT'CG Cuts at: 104 104 Size: 6317 PvuII CAG'CTG Cuts at: 753 1560 1786 3161 3742 4102 753 Size: 807 226 1375 581 360 2968 Fragments arranged by size: 2968 1375 807 581 360 226 RsrII CG'GwC_CG Cuts at: 4512 4512 Size: 6317 SacI G_AGCT'C Cuts at: 347 587 2060 2237 3331 347 Size: 240 1473 177 1094 3333 Fragments arranged by size: 3333 1473 1094 240 177 SalI G'TCGA_C Cuts at: 3354 3354 Size: 6317 SapI GCTCTTCn'nnn_ Cuts at: 4340 4550 4340 Size: 210 6107 SbfI CC_TGCA'GG Cuts at: 386 923 2009 3364 386 Size: 537 1086 1355 3339 Fragments arranged by size: 3339 1355 1086 537 ScaI AGT'ACT Cuts at: 3295 5834 3295 Size: 2539 3778 SfcI C'TryA_G Cuts at: 33 382 418 454 787 919 1126 1495 1701 Size: 349 36 36 333 132 207 369 206 Cuts at: 1701 1992 2005 2047 2269 2386 2863 3191 3360 Size: 291 13 42 222 117 477 328 169 Cuts at: 3360 4045 5038 5229 33 Size: 685 993 191 1121 Fragments arranged by size: 1121 993 685 477 369 349 333 328 291 222 207 206 191 169 132 117 42 36 36 13 SfoI GGC'GCC Cuts at: 195 3749 3997 195 Size: 3554 248 2515 Fragments arranged by size: 3554 2515 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6317 SmaI CCC'GGG Cuts at: 2486 2990 3339 2486 Size: 504 349 5464 Fragments arranged by size: 5464 504 349 SmlI C'TyrA_G Cuts at: 586 1036 1255 1609 1834 2014 2101 2158 3472 Size: 450 219 354 225 180 87 57 1314 Cuts at: 3472 4387 4879 5141 586 Size: 915 492 262 1762 Fragments arranged by size: 1762 1314 915 492 450 354 262 225 219 180 87 57 SnaBI TAC'GTA Cuts at: 3309 3309 Size: 6317 SpeI A'CTAG_T Cuts at: 67 67 Size: 6317 SphI G_CATG'C Cuts at: 2133 3370 3870 2133 Size: 1237 500 4580 Fragments arranged by size: 4580 1237 500 SrfI GCCC'GGGC Cuts at: 2486 2486 Size: 6317 StuI AGG'CCT Cuts at: 2242 2242 Size: 6317 StyI C'CwwG_G Cuts at: 125 263 368 2243 2726 3451 3805 125 Size: 138 105 1875 483 725 354 2637 Fragments arranged by size: 2637 1875 725 483 354 138 105 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 2954 3153 3900 4033 4492 4701 2954 Size: 199 747 133 459 209 4570 Fragments arranged by size: 4570 747 459 209 199 133 TatI w'GTAC_w Cuts at: 3293 5832 3293 Size: 2539 3778 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5834 5866 5834 Size: 32 6285 Tth111I GACn'n_nGTC Cuts at: 4114 4114 Size: 6317 XbaI T'CTAG_A Cuts at: 1905 3348 1905 Size: 1443 4874 XcmI CCAnnnn_n'nnnnTGG Cuts at: 576 3812 576 Size: 3236 3081 XhoI C'TCGA_G Cuts at: 2101 2101 Size: 6317 XmaI C'CCGG_G Cuts at: 2484 2988 3337 2484 Size: 504 349 5464 Fragments arranged by size: 5464 504 349 XmnI GAAnn'nnTTC Cuts at: 413 1352 413 Size: 939 5378 Enzymes that do cut: AccI Acc65I AclI AcuI AflII AflIII AgeI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PspOMI PspXI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SnaBI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI Enzymes that do not cut: AarI AatII AfeI AhdI AscI AvrII BaeI BfrBI BmtI BsiWI BsrGI BstEII BstZ17I Bsu36I ClaI CspCI EcoRV FseI FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PasI PshAI PsiI PsrI SacII SanDI SexAI SfiI SgrAI SspI SwaI ZraI