Result of FASTA (ccds) for
pF1KSDA1317
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1317, 428 aa
1>>>pF1KSDA1317 428 - 428 aa - 428 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0300+/-0.000826; mu= 14.4780+/- 0.050
mean_var=88.8813+/-17.543, 0's: 0 Z-trim(109.3): 36 B-trim: 28 in 1/51
Lambda= 0.136041
statistics sampled from 10782 (10817) to 10782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.332), width: 16
Scan time: 3.080
The best scores are: opt bits E(32554)
CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 ( 428) 2943 587.5 8.3e-168
CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4 ( 473) 1144 234.4 1.8e-61
CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 ( 325) 599 127.4 2e-29
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 298 68.3 1e-11
>>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 (428 aa)
initn: 2943 init1: 2943 opt: 2943 Z-score: 3126.1 bits: 587.5 E(32554): 8.3e-168
Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)
10 20 30 40 50 60
pF1KSD MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QADAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QADAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDML
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SECGFHMVACNSSVTASFINQYTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SECGFHMVACNSSVTASFINQYTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GESGTSCNDLSTSSCDSQSEASSPQETVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GESGTSCNDLSTSSCDSQSEASSPQETVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RKSDLLRTLTSGSRESNMSSKKKAVKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RKSDLLRTLTSGSRESNMSSKKKAVKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQS
370 380 390 400 410 420
pF1KSD ELLRKYHL
::::::::
CCDS34 ELLRKYHL
>>CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4 (473 aa)
initn: 1681 init1: 652 opt: 1144 Z-score: 1217.3 bits: 234.4 E(32554): 1.8e-61
Smith-Waterman score: 1669; 61.7% identity (78.2% similar) in 441 aa overlap (16-428:35-473)
10 20 30 40
pF1KSD MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLIS
: .:. :::::::::::::: :.::::.:
CCDS34 DTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHSTLLS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD IPHSLLWKMFSPK--RDTA---NDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHF
.: : : .::::. : : ..: .::..:::::::::::::.::::::.:..::.::
CCDS34 VPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLALPEHF
70 80 90 100 110 120
110 120 130 140 150
pF1KSD PEKGRLKREAEYFQLPDLVKLLTPDEIKQSP--DEFCHSDFED-ASQGSDTRIC--PPSS
::: :: :::::::: ::::::.: ::. :: :.::.:: .::::. . ..
CCDS34 PEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLRGAAA
130 140 150 160 170 180
160 170 180 190 200
pF1KSD LLPA--------------DRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLA
.:. :.. ::.:.::::: : :..::::::::: ::.:::::.::
CCDS34 AVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALA
190 200 210 220 230 240
210 220 230 240 250 260
pF1KSD KEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFINQ
:::::.:::::::::: ::.::::::::: .::.::: ::: :::::::::: ::.:.::
CCDS34 KEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAAFVNQ
250 260 270 280 290 300
270 280 290 300 310
pF1KSD YTDDKIWSSYTEYVFYREPSRW-SPSHCDCCCKNGK-GDKEGESGTSCNDLSTSSCDSQS
: :::::::::::.:.: :.. ::.. :. : :: .:::::::.::::::::.:
CCDS34 YRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKHDKVTDKGSESGTSCNELSTSSCDSHS
310 320 330 340 350 360
320 330 340 350 360 370
pF1KSD EASSPQE--TVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMRRKSDLLRTLTSGSRESN
:::.::. . ...: : ::::: ::.::: : . ::.:.:..:: : :::.:
CCDS34 EASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKRRNSELFQTLISKSRETN
370 380 390 400 410 420
380 390 400 410 420
pF1KSD MSSKKKAVKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQSELLRKYHL
.:.:: : ::::.:::..:::::: ::.::: :::::. ::::::.:: :
CCDS34 LSKKK--VCEKLSVEEEMKKCIQDFKKIHIPDYFPERKRQWQSELLQKYGL
430 440 450 460 470
>>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 (325 aa)
initn: 1086 init1: 515 opt: 599 Z-score: 641.6 bits: 127.4 E(32554): 2e-29
Smith-Waterman score: 1033; 56.0% identity (73.5% similar) in 302 aa overlap (17-279:26-325)
10 20 30 40 50
pF1KSD MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLL
:: : ::..:::::::::: ::. :..:.: :::
CCDS94 MALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD WKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAE
:.::. .. ..::.:::::::.:::::::::::::::: :.::::.:::..::.::::
CCDS94 WRMFTQQQP--QELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAE
70 80 90 100 110
120 130 140
pF1KSD YFQLPDLVKLL-TPDEIKQSP--------------DEFCHSDF------EDASQGSDTR-
::.::.::. : .:.. .: ::. . : :: :. .
CCDS94 YFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPT
120 130 140 150 160 170
150 160 170 180 190
pF1KSD ---------------ICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRVPRILV
. ::. : ..:. :.::.::::: :.::..::::::::: :: :
CCDS94 LELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITV
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD CGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSV
::. ::::::::.:::::::::: :::::::.::::. ::.::: ::: :::::::.:.
CCDS94 CGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTG
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD TASFINQ--YTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKEGESGTSCNDLST
: .: .. ..::::.::::::: ::
CCDS94 TCAFASSTDQSEDKIWTSYTEYVFCRE
300 310 320
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 303 init1: 209 opt: 298 Z-score: 323.8 bits: 68.3 E(32554): 1e-11
Smith-Waterman score: 298; 45.8% identity (67.3% similar) in 107 aa overlap (27-133:5-107)
10 20 30 40 50 60
pF1KSD MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
. :::::..: : .:: :.: :.: ::: :
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMP
10 20 30
70 80 90 100 110 120
pF1KSD TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
: .::.: :::::: .:::::..:: .. ::. : : : :.:::...:. :..
CCDS31 T----KRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
: :.. : :
CCDS31 ALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCL
100 110 120 130 140 150
428 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:47:47 2016 done: Thu Nov 3 05:47:47 2016
Total Scan time: 3.080 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]