FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1344, 825 aa
  1>>>pF1KSDA1344 825 - 825 aa - 825 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5500+/-0.00117; mu= 19.2398+/- 0.071
 mean_var=65.9099+/-13.356, 0's: 0 Z-trim(101.6): 29  B-trim: 0 in 0/50
 Lambda= 0.157979
 statistics sampled from 6555 (6567) to 6555 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.202), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(32554)
CCDS32083.1 TXNDC16 gene_id:57544|Hs108|chr14      ( 825) 5350 1229.0       0


>>CCDS32083.1 TXNDC16 gene_id:57544|Hs108|chr14           (825 aa)
 initn: 5350 init1: 5350 opt: 5350  Z-score: 6582.8  bits: 1229.0 E(32554):    0
Smith-Waterman score: 5350; 99.8% identity (100.0% similar) in 825 aa overlap (1-825:1-825)

               10        20        30        40        50        60
pF1KSD MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS32 DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GMLGTKDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ
              730       740       750       760       770       780

              790       800       810       820     
pF1KSD HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN
              790       800       810       820     




825 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:54:01 2016 done: Thu Nov  3 05:54:01 2016
 Total Scan time:  3.600 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]