Result of FASTA (ccds) for
pF1KSDA1345
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1345, 1512 aa
1>>>pF1KSDA1345 1512 - 1512 aa - 1512 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1676+/-0.00101; mu= 10.4908+/- 0.061
mean_var=146.8662+/-28.864, 0's: 0 Z-trim(108.4): 20 B-trim: 13 in 1/54
Lambda= 0.105831
statistics sampled from 10185 (10194) to 10185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.313), width: 16
Scan time: 4.930
The best scores are: opt bits E(32554)
CCDS47026.1 CC2D2A gene_id:57545|Hs108|chr4 (1620) 7608 1174.5 0
CCDS53560.1 CC2D2B gene_id:387707|Hs108|chr10 ( 401) 1339 217.1 8.9e-56
CCDS41555.1 CC2D2B gene_id:387707|Hs108|chr10 ( 322) 813 136.7 1.1e-31
>>CCDS47026.1 CC2D2A gene_id:57545|Hs108|chr4 (1620 aa)
initn: 7748 init1: 7608 opt: 7608 Z-score: 6278.4 bits: 1174.5 E(32554): 0
Smith-Waterman score: 9800; 96.2% identity (96.2% similar) in 1544 aa overlap (1-1485:50-1593)
10 20 30
pF1KSD MVSEKSHLGNPQEPVQEEPKTRLLSMTVRR
::::::::::::::::::::::::::::::
CCDS47 EDADMGRQNKNSKVRRQPRKKQPPTAVPKEMVSEKSHLGNPQEPVQEEPKTRLLSMTVRR
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD GPRSLPPIPSTSRTGFAEFSMRGRMREKLQAARSKAESALLQEIPTPRPRRLRSPSKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GPRSLPPIPSTSRTGFAEFSMRGRMREKLQAARSKAESALLQEIPTPRPRRLRSPSKKEL
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD ETEFGTEPGKEVERTQQEVDSQSYSRVKFHDSARKIKPKPQVPPGFPSAEEAYNFFTFNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ETEFGTEPGKEVERTQQEVDSQSYSRVKFHDSARKIKPKPQVPPGFPSAEEAYNFFTFNF
140 150 160 170 180 190
160 170 180 190 200 210
pF1KSD DPEPEGSEEKPKARHRAGTNQEEEEGEEEEPPAQGGGKEMDEEELLNGDDAEDFLLGLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DPEPEGSEEKPKARHRAGTNQEEEEGEEEEPPAQGGGKEMDEEELLNGDDAEDFLLGLDH
200 210 220 230 240 250
220 230 240 250 260 270
pF1KSD VADDFVAVRPADYESIHDRLQMEREMLFIPSRQTVPTYKKLPENVQPRFLEDEGLYTGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VADDFVAVRPADYESIHDRLQMEREMLFIPSRQTVPTYKKLPENVQPRFLEDEGLYTGVR
260 270 280 290 300 310
280 290 300 310 320 330
pF1KSD PEVARTNQNIMENRLLMQDPERRWFGDDGRILALPNPIKPFPSRPPVLTQEQSIKAELET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PEVARTNQNIMENRLLMQDPERRWFGDDGRILALPNPIKPFPSRPPVLTQEQSIKAELET
320 330 340 350 360 370
340 350 360 370 380 390
pF1KSD LYKKAVKYVHSSQHVIRSGDPPGNFQLDIDISGLIFTHHPCFSREHVLAAKLAQLYDQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LYKKAVKYVHSSQHVIRSGDPPGNFQLDIDISGLIFTHHPCFSREHVLAAKLAQLYDQYL
380 390 400 410 420 430
400 410 420 430 440 450
pF1KSD ARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLDTIQKTINEYKSEIRQTRKFRDAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLDTIQKTINEYKSEIRQTRKFRDAEQ
440 450 460 470 480 490
460 470 480 490 500 510
pF1KSD EKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKADQKADEEAYEAEIQAEISEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKADQKADEEAYEAEIQAEISEL
500 510 520 530 540 550
520 530 540 550 560 570
pF1KSD LEEHTEEYAQKMEEYRTSLQQWKAWRKVQRAKKKKRKQAAEEHPGDEIAEPYPEEDLVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LEEHTEEYAQKMEEYRTSLQQWKAWRKVQRAKKKKRKQAAEEHPGDEIAEPYPEEDLVKP
560 570 580 590 600 610
580 590 600 610 620 630
pF1KSD SPPEPTDRAVIEQEVRERAAQSRRRPWEPTLVPELSLAGSVTPNDQCPRAEVSRREDVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPPEPTDRAVIEQEVRERAAQSRRRPWEPTLVPELSLAGSVTPNDQCPRAEVSRREDVKK
620 630 640 650 660 670
640 650 660 670 680 690
pF1KSD RSVYLKVLFNNKEVSRTVSRPLGADFRVHFGQIFNLQIVNWPESLTLQVYETVGHSSPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSVYLKVLFNNKEVSRTVSRPLGADFRVHFGQIFNLQIVNWPESLTLQVYETVGHSSPTL
680 690 700 710 720 730
700 710 720 730 740 750
pF1KSD LAEVFLPIPETTVVTGRAPTEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LAEVFLPIPETTVVTGRAPTEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSG
740 750 760 770 780 790
760 770 780 790 800 810
pF1KSD KVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSIGTSGLTDMKKLAKWAAESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSIGTSGLTDMKKLAKWAAESK
800 810 820 830 840 850
820 830 840 850 860 870
pF1KSD LDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELNRSKRFRLLHLRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELNRSKRFRLLHLRSQ
860 870 880 890 900 910
880 890 900 910 920 930
pF1KSD EVPEFRNYKQVPVYDREIMEKVFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EVPEFRNYKQVPVYDREIMEKVFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESV
920 930 940 950 960 970
940 950 960 970 980 990
pF1KSD INRFLIAKQYFLLADMIVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 INRFLIAKQYFLLADMIVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDG
980 990 1000 1010 1020 1030
1000 1010 1020 1030 1040 1050
pF1KSD DIKLLVNIVRAYDIPVRKPAVSKFQQPSRSSRMFSEKHAASPSTYSPTHNADYPLGQVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DIKLLVNIVRAYDIPVRKPAVSKFQQPSRSSRMFSEKHAASPSTYSPTHNADYPLGQVLV
1040 1050 1060 1070 1080 1090
1060 1070 1080 1090 1100 1110
pF1KSD RPFVEVSFQRTVCHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDVVFINIFDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPFVEVSFQRTVCHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDVVFINIFDEV
1100 1110 1120 1130 1140 1150
1120 1130 1140
pF1KSD LHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIYFQAR---------------------
:::::::::::::::::::::::::::::::::::::::
CCDS47 LHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIYFQARIDGTFKIDIPPVLLGYSKERN
1160 1170 1180 1190 1200 1210
1150 1160 1170
pF1KSD --------------------------------------FESQEDEKLLQATEKFQAECAL
::::::::::::::::::::::
CCDS47 MILERGFDSVRSLSEGSYITLFITIEPQLVPGESIREKFESQEDEKLLQATEKFQAECAL
1220 1230 1240 1250 1260 1270
1180 1190 1200 1210 1220 1230
pF1KSD KFPNRQCLTTVIDISGKTVFITRYLKPLNPPQELLNVYPNNLQATAELVARYVSLIPFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KFPNRQCLTTVIDISGKTVFITRYLKPLNPPQELLNVYPNNLQATAELVARYVSLIPFLP
1280 1290 1300 1310 1320 1330
1240 1250 1260 1270 1280 1290
pF1KSD DTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLLMGNAIPEGPTAYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLLMGNAIPEGPTAYV
1340 1350 1360 1370 1380 1390
1300 1310 1320 1330 1340 1350
pF1KSD LTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCLIGPDNIWFNIQRYESPLRINFDVTRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCLIGPDNIWFNIQRYESPLRINFDVTRP
1400 1410 1420 1430 1440 1450
1360 1370 1380 1390 1400 1410
pF1KSD KLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAAAELQDRIEKILKEKIMDWRPRHLTRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAAAELQDRIEKILKEKIMDWRPRHLTRW
1460 1470 1480 1490 1500 1510
1420 1430 1440 1450 1460 1470
pF1KSD NRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIDAVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIDAVY
1520 1530 1540 1550 1560 1570
1480 1490 1500 1510
pF1KSD STGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLIRNR
::::::::::::::
CCDS47 STGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLIRNR
1580 1590 1600 1610 1620
>>CCDS53560.1 CC2D2B gene_id:387707|Hs108|chr10 (401 aa)
initn: 1322 init1: 1245 opt: 1339 Z-score: 1114.9 bits: 217.1 E(32554): 8.9e-56
Smith-Waterman score: 1339; 46.3% identity (77.3% similar) in 397 aa overlap (1116-1512:7-401)
1090 1100 1110 1120 1130 1140
pF1KSD PNGDYSTASLQSVKDVVFINIFDEVLHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIY
:: .. . :. :...::::. .:::..
CCDS53 MMTEKHEDHCLKSCSGHSYIRKNWLGCIVFPFSALL
10 20 30
1150 1160 1170 1180 1190 1200
pF1KSD FQARFESQEDEKLLQATEKFQAECALKFPNRQCLTTVIDISGKTVFITRYLKPLNPPQEL
:..: .: . .:: .. :. .: ::::. .:::.. : ..:::.: :::::.:
CCDS53 QQSEFLDQTE--VLQRAQIFKKNCKAMFPNRRIVTTVFNDEGIQFLVTRYIKALNPPQQL
40 50 60 70 80 90
1210 1220 1230 1240 1250 1260
pF1KSD LNVYPNNLQATAELVARYVSLIPFLPDTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLC
:... .: .:: .:.::.::::::.:.: . . :.: ::.. ..: :..::::.:::
CCDS53 LDIFLHNSNATFDLIARFVSLIPFVPNTPDENDGSDIWMTSEHCISLAIGNKEEHAILLC
100 110 120 130 140 150
1270 1280 1290 1300 1310 1320
pF1KSD NYFLSLGKKAWLLMGNAIPEGPTAYVLTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCL
:.:: .:::: .:.:... :: .:::.: : ..::.::: .:. : ::: :::::.: ::
CCDS53 NFFLYFGKKALVLLGTSVLEGHVAYVVTQETNEYLLWNPSTGQCYKQFDPFCPLKSVDCL
160 170 180 190 200 210
1330 1340 1350 1360 1370 1380
pF1KSD IGPDNIWFNIQRYESPLRINFDVTRPKLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAA
. :.:::::. ..:. . :: .. ..::... ... ..:.::::.:: ..::. .
CCDS53 FDDRNVWFNIQQNNTPMAVFFDYSKESFWKQLLPKNVQGTKIQSIQPEEIIYFETDKSMV
220 230 240 250 260 270
1390 1400 1410 1420 1430 1440
pF1KSD AELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQ
.:..:::. :: :.:.:::.: :.::: :: ::..:: :: . : : .. :. .
CCDS53 EDLRNRIERTLKSKVMEWRPKHPTHWNRQCTFILRQILPKLEFGIGSFVSSEGDNEFERI
280 290 300 310 320 330
1450 1460 1470 1480 1490 1500
pF1KSD LGDYRFSGFPLHMPYSEVKPLIDAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYV
: : .:::..::: .:. .:::::.::.:. . :..::::::::::::.:.::::.:.
CCDS53 LQFYWVTGFPIQMPYIDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYL
340 350 360 370 380 390
1510
pF1KSD ASLIRNR
:::....
CCDS53 ASLVQHQ
400
>>CCDS41555.1 CC2D2B gene_id:387707|Hs108|chr10 (322 aa)
initn: 1062 init1: 708 opt: 813 Z-score: 682.3 bits: 136.7 E(32554): 1.1e-31
Smith-Waterman score: 937; 37.3% identity (63.2% similar) in 397 aa overlap (1116-1512:7-322)
1090 1100 1110 1120 1130 1140
pF1KSD PNGDYSTASLQSVKDVVFINIFDEVLHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIY
:: .. . :. :...::::. .:::..
CCDS41 MMTEKHEDHCLKSCSGHSYIRKNWLGCIVFPFSALL
10 20 30
1150 1160 1170 1180 1190 1200
pF1KSD FQARFESQEDEKLLQATEKFQAECALKFPNRQCLTTVIDISGKTVFITRYLKPLNPPQEL
:..: .: . .:: .. :. .: ::::. .:::.. : ..:::.: :::::.:
CCDS41 QQSEFLDQTE--VLQRAQIFKKNCKAMFPNRRIVTTVFNDEGIQFLVTRYIKALNPPQQL
40 50 60 70 80 90
1210 1220 1230 1240 1250 1260
pF1KSD LNVYPNNLQATAELVARYVSLIPFLPDTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLC
:... .: .:: .:.::.::::::.:.: . . :.: ::.. ..: :..::::.:::
CCDS41 LDIFLHNSNATFDLIARFVSLIPFVPNTPDENDGSDIWMTSEHCISLAIGNKEEHAILLC
100 110 120 130 140 150
1270 1280 1290 1300 1310 1320
pF1KSD NYFLSLGKKAWLLMGNAIPEGPTAYVLTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCL
:.:: .:::: .:.:... :: .:::.: : ..::.::: .:. : ::: :::::.: ::
CCDS41 NFFLYFGKKALVLLGTSVLEGHVAYVVTQETNEYLLWNPSTGQCYKQFDPFCPLKSVDCL
160 170 180 190 200 210
1330 1340 1350 1360 1370 1380
pF1KSD IGPDNIWFNIQRYESPLRINFDVTRPKLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAA
. :.:::::. ..:. . :: .. ..::... ... ..:.:
CCDS41 FDDRNVWFNIQQNNTPMAVFFDYSKESFWKQLLPKNVQGTKIQSIQ--------------
220 230 240 250 260
1390 1400 1410 1420 1430 1440
pF1KSD AELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQ
CCDS41 ------------------------------------------------------------
1450 1460 1470 1480 1490 1500
pF1KSD LGDYRFSGFPLHMPYSEVKPLIDAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYV
.:::..::: .:. .:::::.::.:. . :..::::::::::::.:.::::.:.
CCDS41 -----VTGFPIQMPYIDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYL
270 280 290 300 310
1510
pF1KSD ASLIRNR
:::....
CCDS41 ASLVQHQ
320
1512 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:54:49 2016 done: Thu Nov 3 05:54:50 2016
Total Scan time: 4.930 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]