Result of FASTA (ccds) for
pF1KSDA1360
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1360, 794 aa
1>>>pF1KSDA1360 794 - 794 aa - 794 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9044+/-0.00114; mu= -1.6631+/- 0.068
mean_var=193.5835+/-41.486, 0's: 0 Z-trim(107.4): 47 B-trim: 591 in 1/51
Lambda= 0.092181
statistics sampled from 9523 (9545) to 9523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.293), width: 16
Scan time: 4.180
The best scores are: opt bits E(32554)
CCDS81726.1 SCYL2 gene_id:55681|Hs108|chr12 ( 933) 5193 703.9 3e-202
CCDS9076.1 SCYL2 gene_id:55681|Hs108|chr12 ( 929) 5151 698.3 1.4e-200
>>CCDS81726.1 SCYL2 gene_id:55681|Hs108|chr12 (933 aa)
initn: 5193 init1: 5193 opt: 5193 Z-score: 3744.4 bits: 703.9 E(32554): 3e-202
Smith-Waterman score: 5193; 99.6% identity (99.7% similar) in 794 aa overlap (1-794:140-933)
10 20 30
pF1KSD MSGDIGDYKLYDVETKYGLLQVSEGLSFLH
.: :: ::::::::::::::::::::::::
CCDS81 ESRDCLAFCTEPVFASLANVLGNWENLPSPISPDIKDYKLYDVETKYGLLQVSEGLSFLH
110 120 130 140 150 160
40 50 60 70 80 90
pF1KSD SSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQEPKFPCKEWDPNLPSLCLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQEPKFPCKEWDPNLPSLCLPN
170 180 190 200 210 220
100 110 120 130 140 150
pF1KSD PEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLG
230 240 250 260 270 280
160 170 180 190 200 210
pF1KSD SSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQK
290 300 310 320 330 340
220 230 240 250 260 270
pF1KSD SQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLI
350 360 370 380 390 400
280 290 300 310 320 330
pF1KSD LPELGPVFKQQEPIQASNMILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LPELGPVFKQQEPIQASNMILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQ
410 420 430 440 450 460
340 350 360 370 380 390
pF1KSD ELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVL
470 480 490 500 510 520
400 410 420 430 440 450
pF1KSD DDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNL
530 540 550 560 570 580
460 470 480 490 500 510
pF1KSD NQFNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIGNQMNVSEEMKVTNIGNQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NQFNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIGNQMNVSEEMKVTNIGNQQI
590 600 610 620 630 640
520 530 540 550 560 570
pF1KSD DKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQ
650 660 670 680 690 700
580 590 600 610 620 630
pF1KSD VHTPVATVKQTKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VHTPVATVKQTKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNT
710 720 730 740 750 760
640 650 660 670 680 690
pF1KSD KRNLTNGLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KRNLTNGLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPA
770 780 790 800 810 820
700 710 720 730 740 750
pF1KSD GAKQTQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GAKQTQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQ
830 840 850 860 870 880
760 770 780 790
pF1KSD MNVIGQSAFGMQGNPFFNPQNFAQPPTTMTNSSSASNDLKDLFG
::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MNVIGQSAFGMQGNPFFNPQNFAQPPTTMTNSSSASNDLKDLFG
890 900 910 920 930
>>CCDS9076.1 SCYL2 gene_id:55681|Hs108|chr12 (929 aa)
initn: 5155 init1: 3281 opt: 5151 Z-score: 3714.3 bits: 698.3 E(32554): 1.4e-200
Smith-Waterman score: 5151; 99.1% identity (99.2% similar) in 794 aa overlap (1-794:140-929)
10 20 30
pF1KSD MSGDIGDYKLYDVETKYGLLQVSEGLSFLH
.: :: ::::::::::::::::::::::::
CCDS90 ESRDCLAFCTEPVFASLANVLGNWENLPSPISPDIKDYKLYDVETKYGLLQVSEGLSFLH
110 120 130 140 150 160
40 50 60 70 80 90
pF1KSD SSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQEPKFPCKEWDPNLPSLCLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQEPKFPCKEWDPNLPSLCLPN
170 180 190 200 210 220
100 110 120 130 140 150
pF1KSD PEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 PEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLG
230 240 250 260 270 280
160 170 180 190 200 210
pF1KSD SSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQK
290 300 310 320 330 340
220 230 240 250 260 270
pF1KSD SQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLI
350 360 370 380 390 400
280 290 300 310 320 330
pF1KSD LPELGPVFKQQEPIQASNMILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQ
::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS90 LPELGPVFKQQEPIQ----ILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQ
410 420 430 440 450 460
340 350 360 370 380 390
pF1KSD ELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVL
470 480 490 500 510 520
400 410 420 430 440 450
pF1KSD DDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 DDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNL
530 540 550 560 570 580
460 470 480 490 500 510
pF1KSD NQFNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIGNQMNVSEEMKVTNIGNQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 NQFNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIGNQMNVSEEMKVTNIGNQQI
590 600 610 620 630 640
520 530 540 550 560 570
pF1KSD DKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 DKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQ
650 660 670 680 690 700
580 590 600 610 620 630
pF1KSD VHTPVATVKQTKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 VHTPVATVKQTKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNT
710 720 730 740 750 760
640 650 660 670 680 690
pF1KSD KRNLTNGLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KRNLTNGLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPA
770 780 790 800 810 820
700 710 720 730 740 750
pF1KSD GAKQTQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GAKQTQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQ
830 840 850 860 870 880
760 770 780 790
pF1KSD MNVIGQSAFGMQGNPFFNPQNFAQPPTTMTNSSSASNDLKDLFG
::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MNVIGQSAFGMQGNPFFNPQNFAQPPTTMTNSSSASNDLKDLFG
890 900 910 920
794 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:58:59 2016 done: Thu Nov 3 05:59:00 2016
Total Scan time: 4.180 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]