Result of FASTA (ccds) for
pF1KSDA1394
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1394, 966 aa
1>>>pF1KSDA1394 966 - 966 aa - 966 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7181+/-0.000721; mu= 20.3303+/- 0.044
mean_var=85.1413+/-16.956, 0's: 0 Z-trim(111.3): 13 B-trim: 105 in 1/50
Lambda= 0.138997
statistics sampled from 12300 (12306) to 12300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.378), width: 16
Scan time: 5.380
The best scores are: opt bits E(32554)
CCDS53667.1 CARNS1 gene_id:57571|Hs108|chr11 ( 950) 6480 1309.5 0
CCDS44658.1 CARNS1 gene_id:57571|Hs108|chr11 ( 827) 5584 1129.8 0
>>CCDS53667.1 CARNS1 gene_id:57571|Hs108|chr11 (950 aa)
initn: 6480 init1: 6480 opt: 6480 Z-score: 7015.8 bits: 1309.5 E(32554): 0
Smith-Waterman score: 6480; 100.0% identity (100.0% similar) in 949 aa overlap (18-966:2-950)
10 20 30 40 50 60
pF1KSD MCPLAHPAQDLPLLPSQLSLDPSGPEWDCPLGSKDLEEEGPWGGGSGLPPTGCFPGSWRQ
:::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLSLDPSGPEWDCPLGSKDLEEEGPWGGGSGLPPTGCFPGSWRQ
10 20 30 40
70 80 90 100 110 120
pF1KSD DVGLDCKGSPEGAEARAWTVYYYSLLQSCLQQAGLPETQDRGQVPRTGCPGAEVTLCVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DVGLDCKGSPEGAEARAWTVYYYSLLQSCLQQAGLPETQDRGQVPRTGCPGAEVTLCVLG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD SPSTFLPVLLEGGVQSPGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SPSTFLPVLLEGGVQSPGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD DFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDRLLTRQLLAQQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDRLLTRQLLAQQG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD GVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAFLRSEALGDILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAFLRSEALGDILQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD VAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAVYPPAQLPCSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAVYPPAQLPCSDG
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD PSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLGE
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD EAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPV
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD ALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCLMEGKQLLVVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCLMEGKQLLVVGA
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD GGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDEENARLLAELVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDEENARLLAELVR
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD ARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLHLLHHHGPPWPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLHLLHHHGPPWPA
590 600 610 620 630 640
670 680 690 700 710 720
pF1KSD PSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSRITRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSRITRD
650 660 670 680 690 700
730 740 750 760 770 780
pF1KSD LQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNGPTRLPGFTETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNGPTRLPGFTETA
710 720 730 740 750 760
790 800 810 820 830 840
pF1KSD ACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRD
770 780 790 800 810 820
850 860 870 880 890 900
pF1KSD WILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQA
830 840 850 860 870 880
910 920 930 940 950 960
pF1KSD LHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAH
890 900 910 920 930 940
pF1KSD FLSHFK
::::::
CCDS53 FLSHFK
950
>>CCDS44658.1 CARNS1 gene_id:57571|Hs108|chr11 (827 aa)
initn: 5584 init1: 5584 opt: 5584 Z-score: 6045.6 bits: 1129.8 E(32554): 0
Smith-Waterman score: 5584; 100.0% identity (100.0% similar) in 827 aa overlap (140-966:1-827)
110 120 130 140 150 160
pF1KSD PGAEVTLCVLGSPSTFLPVLLEGGVQSPGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAV
::::::::::::::::::::::::::::::
CCDS44 MLLCLSPAWLMKVPAPGQPGEAALLVSKAV
10 20 30
170 180 190 200 210 220
pF1KSD SFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDR
40 50 60 70 80 90
230 240 250 260 270 280
pF1KSD LLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAF
100 110 120 130 140 150
290 300 310 320 330 340
pF1KSD LRSEALGDILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LRSEALGDILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAV
160 170 180 190 200 210
350 360 370 380 390 400
pF1KSD YPPAQLPCSDGPSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YPPAQLPCSDGPSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTL
220 230 240 250 260 270
410 420 430 440 450 460
pF1KSD EVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFA
280 290 300 310 320 330
470 480 490 500 510 520
pF1KSD LTAAGGVLTPVALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LTAAGGVLTPVALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCL
340 350 360 370 380 390
530 540 550 560 570 580
pF1KSD MEGKQLLVVGAGGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGKQLLVVGAGGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDE
400 410 420 430 440 450
590 600 610 620 630 640
pF1KSD ENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLH
460 470 480 490 500 510
650 660 670 680 690 700
pF1KSD LLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQ
520 530 540 550 560 570
710 720 730 740 750 760
pF1KSD CHEHFSRITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CHEHFSRITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNG
580 590 600 610 620 630
770 780 790 800 810 820
pF1KSD PTRLPGFTETAACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTRLPGFTETAACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEI
640 650 660 670 680 690
830 840 850 860 870 880
pF1KSD NPRMGGFYLRDWILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPRMGGFYLRDWILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQAL
700 710 720 730 740 750
890 900 910 920 930 940
pF1KSD SSTASRETLQALHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSTASRETLQALHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGL
760 770 780 790 800 810
950 960
pF1KSD GIDGPSYPVAHFLSHFK
:::::::::::::::::
CCDS44 GIDGPSYPVAHFLSHFK
820
966 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:07:14 2016 done: Thu Nov 3 06:07:15 2016
Total Scan time: 5.380 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]