FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1443, 549 aa
  1>>>pF1KSDA1443 549 - 549 aa - 549 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0493+/-0.000833; mu= 0.3753+/- 0.051
 mean_var=291.5429+/-58.010, 0's: 0 Z-trim(117.4): 8  B-trim: 0 in 0/55
 Lambda= 0.075114
 statistics sampled from 18104 (18112) to 18104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.556), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS45085.1 HOMEZ gene_id:57594|Hs108|chr14        ( 550) 3803 425.1 1.1e-118


>>CCDS45085.1 HOMEZ gene_id:57594|Hs108|chr14             (550 aa)
 initn: 4057 init1: 3784 opt: 3803  Z-score: 2244.5  bits: 425.1 E(32554): 1.1e-118
Smith-Waterman score: 3803; 99.8% identity (99.8% similar) in 550 aa overlap (1-549:1-550)

               10        20        30        40        50        60
pF1KSD MVRGWEPPPGLDCAISEGHKSEGTMPPNKEASGLSSSPAGLICLPPISEELQLVWTQAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVRGWEPPPGLDCAISEGHKSEGTMPPNKEASGLSSSPAGLICLPPISEELQLVWTQAAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TSELDSNEHLLKTFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISWSSEEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TSELDSNEHLLKTFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISWSSEEIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ETRARVVYRRDQLHFKSLLSFTHHAGRPPEEVPPPPVPAPEQVGIGIGPPTLSKPTQTKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ETRARVVYRRDQLHFKSLLSFTHHAGRPPEEVPPPPVPAPEQVGIGIGPPTLSKPTQTKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LKVEPEEPSQMPPLPQSHQKLKESLMTPGSGAFPYQSDFWQHLQSSGLSKEQAGRGPNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKVEPEEPSQMPPLPQSHQKLKESLMTPGSGAFPYQSDFWQHLQSSGLSKEQAGRGPNQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HGIGTASWNHSTTVPQPQARDKPPPIALIASSCKEESASSVTPSSSSTSSSFQVLANGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HGIGTASWNHSTTVPQPQARDKPPPIALIASSCKEESASSVTPSSSSTSSSFQVLANGAT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AASKPLQPLGCVPQSVSPSEQALPPHLEPAWPQGLRHNSVPGRVGPTEYLSPDMQRQRKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AASKPLQPLGCVPQSVSPSEQALPPHLEPAWPQGLRHNSVPGRVGPTEYLSPDMQRQRKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DNAVPGAPSFQDPAIPTPPPSTRSLNERAETPPLPIPPPPPDIQPLERYWAAHQQLRETD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DNAVPGAPSFQDPAIPTPPPSTRSLNERAETPPLPIPPPPPDIQPLERYWAAHQQLRETD
              430       440       450       460       470       480

              490       500       510       520       530          
pF1KSD IPQLSQASRLSTQQVLDWFDSRLPQPAEVVVCLDEEEEEEEEELPEDDEEEEEEEE-DDD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS45 IPQLSQASRLSTQQVLDWFDSRLPQPAEVVVCLDEEEEEEEEELPEDDEEEEEEEEEDDD
              490       500       510       520       530       540

     540         
pF1KSD DDDDDVIIQD
       ::::::::::
CCDS45 DDDDDVIIQD
              550




549 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:20:36 2016 done: Thu Nov  3 06:20:36 2016
 Total Scan time:  3.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]