FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1456, 367 aa
  1>>>pF1KSDA1456 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9889+/-0.000866; mu= 13.3605+/- 0.052
 mean_var=81.7704+/-16.741, 0's: 0 Z-trim(108.0): 21  B-trim: 456 in 1/52
 Lambda= 0.141833
 statistics sampled from 9915 (9920) to 9915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS47808.1 KIAA1456 gene_id:57604|Hs108|chr8      ( 454) 2493 519.8 1.8e-147


>>CCDS47808.1 KIAA1456 gene_id:57604|Hs108|chr8           (454 aa)
 initn: 2493 init1: 2493 opt: 2493  Z-score: 2760.9  bits: 519.8 E(32554): 1.8e-147
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:88-454)

                                             10        20        30
pF1KSD                               MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
                                     ::::::::::::::::::::::::::::::
CCDS47 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
        60        70        80        90       100       110       

               40        50        60        70        80        90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS47 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
       120       130       140       150       160       170       

              100       110       120       130       140       150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS47 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
       180       190       200       210       220       230       

              160       170       180       190       200       210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
       240       250       260       270       280       290       

              220       230       240       250       260       270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
       300       310       320       330       340       350       

              280       290       300       310       320       330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
       360       370       380       390       400       410       

              340       350       360       
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
       ::::::::::::::::::::::::::::::::: :::
CCDS47 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
       420       430       440       450    




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:22:34 2016 done: Thu Nov  3 06:22:34 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]