Result of FASTA (omim) for
pF1KSDA1456
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1456, 367 aa
1>>>pF1KSDA1456 367 - 367 aa - 367 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4021+/-0.000375; mu= 16.8200+/- 0.023
mean_var=85.7359+/-17.449, 0's: 0 Z-trim(114.8): 40 B-trim: 0 in 0/53
Lambda= 0.138514
statistics sampled from 24764 (24803) to 24764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.291), width: 16
Scan time: 8.220
The best scores are: opt bits E(85289)
XP_016869203 (OMIM: 615666) PREDICTED: probable tR ( 367) 2493 508.1 1.3e-143
XP_016869202 (OMIM: 615666) PREDICTED: probable tR ( 367) 2493 508.1 1.3e-143
XP_005273647 (OMIM: 615666) PREDICTED: probable tR ( 418) 2493 508.1 1.4e-143
XP_005273648 (OMIM: 615666) PREDICTED: probable tR ( 418) 2493 508.1 1.4e-143
XP_016869201 (OMIM: 615666) PREDICTED: probable tR ( 418) 2493 508.1 1.4e-143
XP_016869200 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_016869199 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_016869197 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_016869198 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_005273644 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_005273645 (OMIM: 615666) PREDICTED: probable tR ( 423) 2493 508.2 1.4e-143
XP_016869196 (OMIM: 615666) PREDICTED: probable tR ( 454) 2493 508.2 1.5e-143
XP_005273643 (OMIM: 615666) PREDICTED: probable tR ( 454) 2493 508.2 1.5e-143
XP_016869195 (OMIM: 615666) PREDICTED: probable tR ( 454) 2493 508.2 1.5e-143
XP_016869194 (OMIM: 615666) PREDICTED: probable tR ( 454) 2493 508.2 1.5e-143
NP_065895 (OMIM: 615666) probable tRNA methyltrans ( 454) 2493 508.2 1.5e-143
XP_011542900 (OMIM: 615666) PREDICTED: probable tR ( 474) 2493 508.2 1.5e-143
XP_011542902 (OMIM: 615666) PREDICTED: probable tR ( 474) 2493 508.2 1.5e-143
XP_011542903 (OMIM: 615666) PREDICTED: probable tR ( 474) 2493 508.2 1.5e-143
XP_005273642 (OMIM: 615666) PREDICTED: probable tR ( 474) 2493 508.2 1.5e-143
XP_005273641 (OMIM: 615666) PREDICTED: probable tR ( 523) 2493 508.2 1.7e-143
XP_011542899 (OMIM: 615666) PREDICTED: probable tR ( 539) 2493 508.2 1.7e-143
XP_011542898 (OMIM: 615666) PREDICTED: probable tR ( 539) 2493 508.2 1.7e-143
NP_001093147 (OMIM: 615666) probable tRNA methyltr ( 328) 2231 455.7 6.8e-128
XP_016869204 (OMIM: 615666) PREDICTED: probable tR ( 328) 2231 455.7 6.8e-128
XP_016874044 (OMIM: 613306) PREDICTED: alkylated D ( 412) 244 58.7 2.7e-08
XP_005271786 (OMIM: 613306) PREDICTED: alkylated D ( 527) 244 58.8 3.3e-08
XP_005271785 (OMIM: 613306) PREDICTED: alkylated D ( 527) 244 58.8 3.3e-08
NP_620130 (OMIM: 613306) alkylated DNA repair prot ( 664) 244 58.9 3.9e-08
NP_001287939 (OMIM: 613306) alkylated DNA repair p ( 667) 244 58.9 3.9e-08
>>XP_016869203 (OMIM: 615666) PREDICTED: probable tRNA m (367 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2699.4 bits: 508.1 E(85289): 1.3e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NRRFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQG
::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKEQSLDEEVFVESSSGKHLEWLRAP
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 VRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQSLDEEVFVESSSGKHLEWLRAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIEDDNPSASKILRRISAVDSTDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIEDDNPSASKILRRISAVDSTDF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKENVSELRILSSGNDHGNWCIIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKENVSELRILSSGNDHGNWCIIA
310 320 330 340 350 360
pF1KSD EKKGGCD
::: :::
XP_016 EKKRGCD
>>XP_016869202 (OMIM: 615666) PREDICTED: probable tRNA m (367 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2699.4 bits: 508.1 E(85289): 1.3e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NRRFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQG
::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKEQSLDEEVFVESSSGKHLEWLRAP
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 VRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQSLDEEVFVESSSGKHLEWLRAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIEDDNPSASKILRRISAVDSTDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIEDDNPSASKILRRISAVDSTDF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKENVSELRILSSGNDHGNWCIIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKENVSELRILSSGNDHGNWCIIA
310 320 330 340 350 360
pF1KSD EKKGGCD
::: :::
XP_016 EKKRGCD
>>XP_005273647 (OMIM: 615666) PREDICTED: probable tRNA m (418 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.7 bits: 508.1 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:52-418)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_005 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_005 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410
>>XP_005273648 (OMIM: 615666) PREDICTED: probable tRNA m (418 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.7 bits: 508.1 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:52-418)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_005 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_005 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410
>>XP_016869201 (OMIM: 615666) PREDICTED: probable tRNA m (418 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.7 bits: 508.1 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:52-418)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_016 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_016 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410
>>XP_016869200 (OMIM: 615666) PREDICTED: probable tRNA m (423 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.6 bits: 508.2 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:57-423)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_016 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_016 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410 420
>>XP_016869199 (OMIM: 615666) PREDICTED: probable tRNA m (423 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.6 bits: 508.2 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:57-423)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_016 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_016 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410 420
>>XP_016869197 (OMIM: 615666) PREDICTED: probable tRNA m (423 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.6 bits: 508.2 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:57-423)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_016 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_016 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410 420
>>XP_016869198 (OMIM: 615666) PREDICTED: probable tRNA m (423 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.6 bits: 508.2 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:57-423)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_016 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_016 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410 420
>>XP_005273644 (OMIM: 615666) PREDICTED: probable tRNA m (423 aa)
initn: 2493 init1: 2493 opt: 2493 Z-score: 2698.6 bits: 508.2 E(85289): 1.4e-143
Smith-Waterman score: 2493; 98.9% identity (99.2% similar) in 367 aa overlap (1-367:57-423)
10 20 30
pF1KSD MVCDNLNLPFRDEGFDAIISIGVIHHFSTK
::::::::::::::::::::::::::::::
XP_005 YLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KSD QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRRFEKQDVLVPWNRALCSQLFSESSQSGR
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 QRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KSD KRQCGYPERGHPYHPPCSECSCSVCFKEQGGSKRSHSVGYEPAMARTCFANISKEGEEEY
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 KRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KSD GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KSD EPFSTKEQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFRE
330 340 350 360 370 380
340 350 360
pF1KSD GELCSLLKENVSELRILSSGNDHGNWCIIAEKKGGCD
::::::::::::::::::::::::::::::::: :::
XP_005 GELCSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD
390 400 410 420
367 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:22:35 2016 done: Thu Nov 3 06:22:36 2016
Total Scan time: 8.220 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]