FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1499, 617 aa
  1>>>pF1KSDA1499 617 - 617 aa - 617 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2282+/-0.000937; mu= 21.0722+/- 0.057
 mean_var=88.4578+/-17.384, 0's: 0 Z-trim(107.4): 32  B-trim: 44 in 1/51
 Lambda= 0.136366
 statistics sampled from 9524 (9535) to 9524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.293), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS45812.1 NPLOC4 gene_id:55666|Hs108|chr17       ( 608) 3773 752.7 3.3e-217


>>CCDS45812.1 NPLOC4 gene_id:55666|Hs108|chr17            (608 aa)
 initn: 3772 init1: 3772 opt: 3773  Z-score: 4013.1  bits: 752.7 E(32554): 3.3e-217
Smith-Waterman score: 3773; 97.9% identity (98.4% similar) in 573 aa overlap (1-572:1-573)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
              490       500       510       520       530       540

              550       560        570       580       590         
pF1KSD QTWKRSEQWATIEQLCSEYPHPLPR-HPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPS
       :::::::::::::::::     ::  :  ...:                           
CCDS45 QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC
              550       560       570       580       590       600

     600       610       
pF1KSD AMQRVETRPPCQARGRLR
                         
CCDS45 EMCSLPRT          
                         




617 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:30:52 2016 done: Thu Nov  3 06:30:53 2016
 Total Scan time:  3.300 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]