FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1504, 426 aa
  1>>>pF1KSDA1504 426 - 426 aa - 426 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9692+/-0.000876; mu= 9.8261+/- 0.053
 mean_var=100.7257+/-20.077, 0's: 0 Z-trim(109.0): 15  B-trim: 0 in 0/50
 Lambda= 0.127792
 statistics sampled from 10554 (10564) to 10554 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.325), width:  16
 Scan time:  3.160

The best scores are:                                      opt bits E(32554)
CCDS45436.1 ERI2 gene_id:112479|Hs108|chr16        ( 691) 2855 536.8 2.5e-152


>>CCDS45436.1 ERI2 gene_id:112479|Hs108|chr16             (691 aa)
 initn: 2855 init1: 2855 opt: 2855  Z-score: 2848.3  bits: 536.8 E(32554): 2.5e-152
Smith-Waterman score: 2855; 99.8% identity (99.8% similar) in 426 aa overlap (1-426:266-691)

                                             10        20        30
pF1KSD                               MSACNISIQGPSIYNKEPKNIINPHEKVQM
                                     ::::::::::::::::::::::::::::::
CCDS45 MKITRSLNKVPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQM
         240       250       260       270       280       290     

               40        50        60        70        80        90
pF1KSD KSICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPICMQK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS45 KSICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQK
         300       310       320       330       340       350     

              100       110       120       130       140       150
pF1KSD QGKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QGKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLP
         360       370       380       390       400       410     

              160       170       180       190       200       210
pF1KSD ASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIV
         420       430       440       450       460       470     

              220       230       240       250       260       270
pF1KSD YKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRN
         480       490       500       510       520       530     

              280       290       300       310       320       330
pF1KSD PCSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PCSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPP
         540       550       560       570       580       590     

              340       350       360       370       380       390
pF1KSD LCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSH
         600       610       620       630       640       650     

              400       410       420      
pF1KSD STGGLTFSSPETSHICDRNLSISTKNSLRLRPSMRN
       ::::::::::::::::::::::::::::::::::::
CCDS45 STGGLTFSSPETSHICDRNLSISTKNSLRLRPSMRN
         660       670       680       690 




426 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:31:26 2016 done: Thu Nov  3 06:31:26 2016
 Total Scan time:  3.160 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]