FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1538, 1013 aa
  1>>>pF1KSDA1538 1013 - 1013 aa - 1013 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.4112+/-0.00106; mu= -14.6197+/- 0.064
 mean_var=736.5102+/-172.623, 0's: 0 Z-trim(119.0): 11  B-trim: 1091 in 1/54
 Lambda= 0.047259
 statistics sampled from 20033 (20045) to 20033 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.616), width:  16
 Scan time:  5.540

The best scores are:                                      opt bits E(32554)
CCDS11107.1 ZBTB4 gene_id:57659|Hs108|chr17        (1013) 6997 492.8 1.5e-138


>>CCDS11107.1 ZBTB4 gene_id:57659|Hs108|chr17             (1013 aa)
 initn: 6997 init1: 6997 opt: 6997  Z-score: 2600.7  bits: 492.8 E(32554): 1.5e-138
Smith-Waterman score: 6997; 100.0% identity (100.0% similar) in 1013 aa overlap (1-1013:1-1013)

               10        20        30        40        50        60
pF1KSD MPPPAEVTDPSHAPAVLRQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPPPAEVTDPSHAPAVLRQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAAVAEIGALGRRLGISRLQGLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAAVAEIGALGRRLGISRLQGLGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGDAWVPPTPAPMATSQPEEDSFGPGPRPAGEWEGDRAEAQAPDLQCSLPRRPLPCPQCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGDAWVPPTPAPMATSQPEEDSFGPGPRPAGEWEGDRAEAQAPDLQCSLPRRPLPCPQCG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGFRGGPEHVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGFRGGPEHVV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KVVGGHVLYVCAACERSYVTLSSLKRHSNVHSWRRKYPCRYCEKVFALAEYRTKHEVWHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KVVGGHVLYVCAACERSYVTLSSLKRHSNVHSWRRKYPCRYCEKVFALAEYRTKHEVWHT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GERRYQCIFCWETFVTYYNLKTHQRAFHGISPGLLASEKTPNGGYKPKLNTLKLYRLLPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GERRYQCIFCWETFVTYYNLKTHQRAFHGISPGLLASEKTPNGGYKPKLNTLKLYRLLPM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPRPPKKREYPPPPPEPAATPTSPATAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPRPPKKREYPPPPPEPAATPTSPATAV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SPATAAGPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRGPSQLQAPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPATAAGPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRGPSQLQAPPP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LCQITVRIGEEAIVKRRISETDLRPGELSGEEMEESEEDEEEEDEEEEEEDEEESKAGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LCQITVRIGEEAIVKRRISETDLRPGELSGEEMEESEEDEEEEDEEEEEEDEEESKAGGE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD DQLWRPYYSYKPKRKAGAAGGASVGGSGLPRGRRPPRWRQKLERRSWEETPAAESPAGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DQLWRPYYSYKPKRKAGAAGGASVGGSGLPRGRRPPRWRQKLERRSWEETPAAESPAGRA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD RTERRHRCGDCAQTFTTLRKLRKHQEAHGGGSHSSRAGRRPSTRFTCPHCAKVCKTAAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTERRHRCGDCAQTFTTLRKLRKHQEAHGGGSHSSRAGRRPSTRFTCPHCAKVCKTAAAL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD SRHGQRHAAERPGGTPTPVIAYSKGSAGTRPGDVKEEAPQEMQVSSSSGEAGGGSTAAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRHGQRHAAERPGGTPTPVIAYSKGSAGTRPGDVKEEAPQEMQVSSSSGEAGGGSTAAEE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASETASLQDPIISGGEEPPVVASGGSYVYPPVQEFPLALIGGGREPGGGRGKSGSEGPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASETASLQDPIISGGEEPPVVASGGSYVYPPVQEFPLALIGGGREPGGGRGKSGSEGPVG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD AGEGDRMEGIGAAKVTFYPEPYPLVYGPQLLAAYPYNFSNLAALPVALNMVLPDEKGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGEGDRMEGIGAAKVTFYPEPYPLVYGPQLLAAYPYNFSNLAALPVALNMVLPDEKGAGA
              910       920       930       940       950       960

              970       980       990      1000      1010   
pF1KSD LPFLPGVFGYAVNPQAAPPAPPTPPPPTLPPPIPPKGEGERAGVERTQKGDVG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPFLPGVFGYAVNPQAAPPAPPTPPPPTLPPPIPPKGEGERAGVERTQKGDVG
              970       980       990      1000      1010   




1013 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:35:12 2016 done: Thu Nov  3 06:35:13 2016
 Total Scan time:  5.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]