(Circular) (Six-base) MAPSORT of: pF1KSDA1538.seq Check: 375 from: 1 to: 6176 pF1KSDA1538 6176 bp With 182 enzymes: SgfI * June 20, 2008 10:35 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1515 2608 1515 Size: 1093 5083 AatII G_ACGT'C Cuts at: 221 221 Size: 6176 AccI GT'mk_AC Cuts at: 919 2729 3214 919 Size: 1810 485 3881 Fragments arranged by size: 3881 1810 485 Acc65I G'GTAC_C Cuts at: 681 1217 3192 681 Size: 536 1975 3665 Fragments arranged by size: 3665 1975 536 AclI AA'CG_TT Cuts at: 6016 6016 Size: 6176 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 273 293 634 740 1117 1285 2922 4001 4433 Size: 20 341 106 377 168 1637 1079 432 Cuts at: 4433 5180 5448 273 Size: 747 268 1001 Fragments arranged by size: 1637 1079 1001 747 432 377 341 268 168 106 20 AfeI AGC'GCT Cuts at: 2544 2544 Size: 6176 AflIII A'CryG_T Cuts at: 3528 4632 5609 3528 Size: 1104 977 4095 Fragments arranged by size: 4095 1104 977 AgeI A'CCGG_T Cuts at: 4564 4564 Size: 6176 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2206 2501 2206 Size: 295 5881 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 182 214 182 Size: 32 6144 AlwNI CAG_nnn'CTG Cuts at: 337 526 657 1519 1888 1987 2229 3481 5048 Size: 189 131 862 369 99 242 1252 1567 Cuts at: 5048 337 Size: 1465 Fragments arranged by size: 1567 1465 1252 862 369 242 189 131 99 ApaI G_GGCC'C Cuts at: 740 746 1012 1900 3006 740 Size: 6 266 888 1106 3910 Fragments arranged by size: 3910 1106 888 266 6 ApaLI G'TGCA_C Cuts at: 4946 4946 Size: 6176 ApoI r'AATT_y Cuts at: 2746 3180 5529 5785 2746 Size: 434 2349 256 3137 Fragments arranged by size: 3137 2349 434 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6176 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6176 AvaI C'yCGr_G Cuts at: 494 739 1012 1299 1665 2195 2390 2500 2557 Size: 245 273 287 366 530 195 110 57 Cuts at: 2557 3196 494 Size: 639 3474 Fragments arranged by size: 3474 639 530 366 287 273 245 195 110 57 BamHI G'GATC_C Cuts at: 3201 3201 Size: 6176 BanI G'GyrC_C Cuts at: 343 626 681 1217 2167 2300 2506 2548 3192 Size: 283 55 536 950 133 206 42 644 Cuts at: 3192 3606 3854 3889 343 Size: 414 248 35 2630 Fragments arranged by size: 2630 950 644 536 414 283 248 206 133 55 42 35 BanII G_rGCy'C Cuts at: 740 746 1012 1428 1900 2272 2380 2699 2888 Size: 6 266 416 472 372 108 319 189 Cuts at: 2888 3006 3190 4220 740 Size: 118 184 1030 2696 Fragments arranged by size: 2696 1030 472 416 372 319 266 189 184 118 108 6 BbeI G_GCGC'C Cuts at: 347 630 3610 3858 347 Size: 283 2980 248 2665 Fragments arranged by size: 2980 2665 283 248 BbsI GAAGACnn'nnnn_ Cuts at: 395 1273 1327 395 Size: 878 54 5244 Fragments arranged by size: 5244 878 54 BbvCI CC'TCA_GC Cuts at: 779 975 2639 779 Size: 196 1664 4316 Fragments arranged by size: 4316 1664 196 BciVI GTATCCnnnnn_n' Cuts at: 4074 4835 6176 4074 Size: 761 1341 4074 Fragments arranged by size: 4074 1341 761 BclI T'GATC_A Cuts at: 3696 3696 Size: 6176 BglI GCCn_nnn'nGGC Cuts at: 635 653 703 819 1432 1471 1497 635 Size: 18 50 116 613 39 26 5314 Fragments arranged by size: 5314 613 116 50 39 26 18 BglII A'GATC_T Cuts at: 3691 5728 3691 Size: 2037 4139 BlpI GC'TnA_GC Cuts at: 2008 2492 3288 2008 Size: 484 796 4896 Fragments arranged by size: 4896 796 484 Bme1580I G_kGCm'C Cuts at: 740 746 1012 1900 2286 2322 2509 3006 3801 Size: 6 266 888 386 36 187 497 795 Cuts at: 3801 3894 4950 740 Size: 93 1056 1966 Fragments arranged by size: 1966 1056 888 795 497 386 266 187 93 36 6 BmgBI CAC'GTC Cuts at: 2281 2281 Size: 6176 BmrI ACTGGGnnnn_n' Cuts at: 347 831 882 2695 3388 3469 3804 5948 347 Size: 484 51 1813 693 81 335 2144 575 Fragments arranged by size: 2144 1813 693 575 484 335 81 51 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2676 4543 2676 Size: 1867 4309 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 449 523 2136 2174 2183 2650 449 Size: 74 1613 38 9 467 3975 Fragments arranged by size: 3975 1613 467 74 38 9 Bpu10I CC'TnA_GC Cuts at: 779 975 1706 2141 2464 2639 2882 779 Size: 196 731 435 323 175 243 4073 Fragments arranged by size: 4073 731 435 323 243 196 175 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 1345 3032 3352 4231 4723 5021 1345 Size: 1687 320 879 492 298 2500 Fragments arranged by size: 2500 1687 879 492 320 298 BsaI GGTCTCn'nnnn_ Cuts at: 1234 2647 5880 1234 Size: 1413 3233 1530 Fragments arranged by size: 3233 1530 1413 BsaAI yAC'GTr Cuts at: 1020 1044 1080 3168 3529 1020 Size: 24 36 2088 361 3667 Fragments arranged by size: 3667 2088 361 36 24 BsaBI GATnn'nnATC Cuts at: 6 3690 5727 6 Size: 3684 2037 455 Fragments arranged by size: 3684 2037 455 BsaHI Gr'CG_yC Cuts at: 218 344 627 971 3607 3855 4557 6053 218 Size: 126 283 344 2636 248 702 1496 341 Fragments arranged by size: 2636 1496 702 344 341 283 248 126 BsaWI w'CCGG_w Cuts at: 2840 3365 3886 4564 4838 4985 5396 2840 Size: 525 521 678 274 147 411 3620 Fragments arranged by size: 3620 678 525 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 182 212 1201 1231 3063 3078 3093 3108 182 Size: 30 989 30 1832 15 15 15 3250 Fragments arranged by size: 3250 1832 989 30 30 15 15 15 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 375 378 381 411 1688 1804 1969 2032 2041 Size: 3 3 30 1277 116 165 63 9 Cuts at: 2041 2050 2062 2065 2077 2080 2083 2086 2095 Size: 9 12 3 12 3 3 3 9 Cuts at: 2095 2253 2589 2707 375 Size: 158 336 118 3844 Fragments arranged by size: 3844 1277 336 165 158 118 116 63 30 12 12 9 9 9 3 3 3 3 3 3 BseYI C'CCAG_C Cuts at: 519 693 754 927 934 1554 1731 1749 2243 Size: 174 61 173 7 620 177 18 494 Cuts at: 2243 2256 2271 2909 3601 4359 4936 5432 519 Size: 13 15 638 692 758 577 496 1263 Fragments arranged by size: 1263 758 692 638 620 577 496 494 177 174 173 61 18 15 13 7 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 2761 2761 Size: 6176 BsiEI CG_ry'CG Cuts at: 104 2264 2775 3718 3764 4972 104 Size: 2160 511 943 46 1208 1308 Fragments arranged by size: 2160 1308 1208 943 511 46 BsiHKAI G_wGCw'C Cuts at: 808 1019 2632 3190 3968 4158 4950 808 Size: 211 1613 558 778 190 792 2034 Fragments arranged by size: 2034 1613 792 778 558 211 190 Bsp1286I G_dGCh'C Cuts at: 740 746 808 1012 1019 1428 1900 2272 2286 Size: 6 62 204 7 409 472 372 14 Cuts at: 2286 2322 2380 2509 2632 2699 2888 3006 3190 Size: 36 58 129 123 67 189 118 184 Cuts at: 3190 3801 3894 3968 4158 4220 4950 740 Size: 611 93 74 190 62 730 1966 Fragments arranged by size: 1966 730 611 472 409 372 204 190 189 184 129 123 118 93 74 67 62 62 58 36 14 7 6 BspEI T'CCGG_A Cuts at: 5396 5396 Size: 6176 BspHI T'CATG_A Cuts at: 5352 5352 Size: 6176 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1205 1515 2000 2431 2608 3226 3440 3742 4123 Size: 310 485 431 177 618 214 302 381 Cuts at: 4123 1205 Size: 3258 Fragments arranged by size: 3258 618 485 431 381 310 302 214 177 BsrBI CCG'CTC Cuts at: 50 2012 2295 2496 2895 2953 4468 4522 6006 Size: 1962 283 201 399 58 1515 54 1484 Cuts at: 6006 6171 50 Size: 165 55 Fragments arranged by size: 1962 1515 1484 399 283 201 165 58 55 54 BsrDI GCAATG_nn' Cuts at: 1116 1481 2522 4088 1116 Size: 365 1041 1566 3204 Fragments arranged by size: 3204 1566 1041 365 BsrFI r'CCGG_y Cuts at: 1461 2204 4174 4355 4564 1461 Size: 743 1970 181 209 3073 Fragments arranged by size: 3073 1970 743 209 181 BsrGI T'GTAC_A Cuts at: 1113 1113 Size: 6176 BssSI C'ACGA_G Cuts at: 1119 4447 4805 1119 Size: 3328 358 2490 Fragments arranged by size: 3328 2490 358 BstAPI GCAn_nnn'nTGC Cuts at: 3061 3553 3061 Size: 492 5684 BstBI TT'CG_AA Cuts at: 110 4537 110 Size: 4427 1749 BstXI CCAn_nnnn'nTGG Cuts at: 1848 2216 1848 Size: 368 5808 BstYI r'GATC_y Cuts at: 1 3201 3668 3691 4026 4272 5284 5370 5382 Size: 3200 467 23 335 246 1012 86 12 Cuts at: 5382 5728 1 Size: 346 449 Fragments arranged by size: 3200 1012 467 449 346 335 246 86 23 12 BstZ17I GTA'TAC Cuts at: 2730 2730 Size: 6176 Bsu36I CC'TnA_GG Cuts at: 3110 3110 Size: 6176 BtgI C'CryG_G Cuts at: 201 701 1287 1575 1772 1784 1810 2367 2472 Size: 500 586 288 197 12 26 557 105 Cuts at: 2472 201 Size: 3905 Fragments arranged by size: 3905 586 557 500 288 197 105 26 12 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 3170 4126 4307 4470 3170 Size: 956 181 163 4876 Fragments arranged by size: 4876 956 181 163 BtsI GCAGTG_nn' Cuts at: 571 808 1596 1655 2190 2430 2630 3044 3419 Size: 237 788 59 535 240 200 414 375 Cuts at: 3419 571 Size: 3328 Fragments arranged by size: 3328 788 535 414 375 240 237 200 59 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 2741 2776 2741 Size: 35 6141 DraI TTT'AAA Cuts at: 3175 3175 Size: 6176 DraIII CAC_nnn'GTG Cuts at: 1023 1023 Size: 6176 DrdI GACnn_nn'nnGTC Cuts at: 153 3882 4740 153 Size: 3729 858 1589 Fragments arranged by size: 3729 1589 858 EaeI y'GGCC_r Cuts at: 704 1038 1613 1775 1890 2206 2261 2772 2948 Size: 334 575 162 115 316 55 511 176 Cuts at: 2948 3761 3935 4326 4353 5698 704 Size: 813 174 391 27 1345 1182 Fragments arranged by size: 1345 1182 813 575 511 391 334 316 176 174 162 115 55 27 EagI C'GGCC_G Cuts at: 2261 2772 3761 2261 Size: 511 989 4676 Fragments arranged by size: 4676 989 511 EarI CTCTTCn'nnn_ Cuts at: 214 384 399 417 450 456 716 1093 2039 Size: 170 15 18 33 6 260 377 946 Cuts at: 2039 2054 3095 4199 4409 214 Size: 15 1041 1104 210 1981 Fragments arranged by size: 1981 1104 1041 946 377 260 210 170 33 18 15 15 6 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1140 1186 4384 4694 4840 5986 1140 Size: 46 3198 310 146 1146 1330 Fragments arranged by size: 3198 1330 1146 310 146 46 EcoICRI GAG'CTC Cuts at: 3188 3188 Size: 6176 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 273 293 449 523 634 740 1117 1285 2136 Size: 20 156 74 111 106 377 168 851 Cuts at: 2136 2174 2183 2650 2922 4001 4433 5180 5448 Size: 38 9 467 272 1079 432 747 268 Cuts at: 5448 273 Size: 1001 Fragments arranged by size: 1079 1001 851 747 467 432 377 272 268 168 156 111 106 74 38 20 9 EcoNI CCTnn'n_nnAGG Cuts at: 661 661 Size: 6176 EcoO109I rG'GnC_Cy Cuts at: 297 498 654 789 1008 1009 1628 1873 1896 Size: 201 156 135 219 1 619 245 23 Cuts at: 1896 1897 2120 2405 2670 3002 3003 3315 297 Size: 1 223 285 265 332 1 312 3158 Fragments arranged by size: 3158 619 332 312 285 265 245 223 219 201 156 135 23 1 1 1 EcoRI G'AATT_C Cuts at: 3180 3180 Size: 6176 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4195 4195 Size: 6176 FspI TGC'GCA Cuts at: 3957 3957 Size: 6176 HaeII r_GCGC'y Cuts at: 347 563 630 944 1974 2546 3610 3858 4880 Size: 216 67 314 1030 572 1064 248 1022 Cuts at: 4880 5859 347 Size: 979 664 Fragments arranged by size: 1064 1030 1022 979 664 572 314 248 216 67 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 2071 2103 4018 4048 4050 4080 2071 Size: 32 1915 30 2 30 4167 Fragments arranged by size: 4167 1915 32 30 30 2 HincII GTy'rAC Cuts at: 3215 3215 Size: 6176 HindIII A'AGCT_T Cuts at: 849 2645 849 Size: 1796 4380 KasI G'GCGC_C Cuts at: 343 626 3606 3854 343 Size: 283 2980 248 2665 Fragments arranged by size: 2980 2665 283 248 KpnI G_GTAC'C Cuts at: 685 1221 3196 685 Size: 536 1975 3665 Fragments arranged by size: 3665 1975 536 MluI A'CGCG_T Cuts at: 5609 5609 Size: 6176 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1471 2197 4847 5031 1471 Size: 726 2650 184 2616 Fragments arranged by size: 2650 2616 726 184 MscI TGG'CCA Cuts at: 706 1777 3937 706 Size: 1071 2160 2945 Fragments arranged by size: 2945 2160 1071 MslI CAynn'nnrTG Cuts at: 1109 4165 4292 1109 Size: 3056 127 2993 Fragments arranged by size: 3056 2993 127 MspA1I CmG'CkG Cuts at: 195 373 526 601 754 1759 1908 2260 2275 Size: 178 153 75 153 1005 149 352 15 Cuts at: 2275 2458 2609 3287 3601 3961 4974 5219 195 Size: 183 151 678 314 360 1013 245 1152 Fragments arranged by size: 1152 1013 1005 678 360 352 314 245 183 178 153 153 151 149 75 15 NaeI GCC'GGC Cuts at: 2206 4357 2206 Size: 2151 4025 NarI GG'CG_CC Cuts at: 344 627 3607 3855 344 Size: 283 2980 248 2665 Fragments arranged by size: 2980 2665 283 248 NcoI C'CATG_G Cuts at: 701 1575 1772 701 Size: 874 197 5105 Fragments arranged by size: 5105 874 197 NgoMIV G'CCGG_C Cuts at: 2204 4355 2204 Size: 2151 4025 NspI r_CATG'y Cuts at: 2488 3229 3729 4636 2488 Size: 741 500 907 4028 Fragments arranged by size: 4028 907 741 500 PciI A'CATG_T Cuts at: 4632 4632 Size: 6176 PflMI CCAn_nnn'nTGG Cuts at: 337 1519 1816 337 Size: 1182 297 4697 Fragments arranged by size: 4697 1182 297 PfoI T'CCnGG_A Cuts at: 500 2666 500 Size: 2166 4010 PmeI GTTT'AAAC Cuts at: 3175 3175 Size: 6176 PmlI CAC'GTG Cuts at: 1020 1044 1020 Size: 24 6152 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 182 214 5315 5347 182 Size: 32 5101 32 1011 Fragments arranged by size: 5101 1011 32 32 PpuMI rG'GwC_Cy Cuts at: 498 1628 1873 2670 498 Size: 1130 245 797 4004 Fragments arranged by size: 4004 1130 797 245 PshAI GACnn'nnGTC Cuts at: 1246 1994 1246 Size: 748 5428 PspOMI G'GGCC_C Cuts at: 736 742 1008 1896 3002 736 Size: 6 266 888 1106 3910 Fragments arranged by size: 3910 1106 888 266 6 PstI C_TGCA'G Cuts at: 141 875 963 1716 1764 1913 3223 3908 141 Size: 734 88 753 48 149 1310 685 2409 Fragments arranged by size: 2409 1310 753 734 685 149 88 48 PvuI CG_AT'CG Cuts at: 104 104 Size: 6176 PvuII CAG'CTG Cuts at: 373 526 601 754 1908 2458 3601 3961 373 Size: 153 75 153 1154 550 1143 360 2588 Fragments arranged by size: 2588 1154 1143 550 360 153 153 75 RsrII CG'GwC_CG Cuts at: 4371 4371 Size: 6176 SacI G_AGCT'C Cuts at: 3190 3190 Size: 6176 SalI G'TCGA_C Cuts at: 3213 3213 Size: 6176 SanDI GG'GwC_CC Cuts at: 1628 1873 1628 Size: 245 5931 SapI GCTCTTCn'nnn_ Cuts at: 4199 4409 4199 Size: 210 5966 SbfI CC_TGCA'GG Cuts at: 963 3223 963 Size: 2260 3916 ScaI AGT'ACT Cuts at: 5693 5693 Size: 6176 SfcI C'TryA_G Cuts at: 33 137 555 602 871 920 959 1413 1712 Size: 104 418 47 269 49 39 454 299 Cuts at: 1712 1760 1909 3219 3904 4897 5088 33 Size: 48 149 1310 685 993 191 1121 Fragments arranged by size: 1310 1121 993 685 454 418 299 269 191 149 104 49 48 47 39 SfoI GGC'GCC Cuts at: 345 628 3608 3856 345 Size: 283 2980 248 2665 Fragments arranged by size: 2980 2665 283 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6176 SmaI CCC'GGG Cuts at: 496 741 1301 2392 2502 2559 3198 496 Size: 245 560 1091 110 57 639 3474 Fragments arranged by size: 3474 1091 639 560 245 110 57 SmlI C'TyrA_G Cuts at: 1360 3047 3331 4246 4738 5000 1360 Size: 1687 284 915 492 262 2536 Fragments arranged by size: 2536 1687 915 492 284 262 SnaBI TAC'GTA Cuts at: 3168 3168 Size: 6176 SpeI A'CTAG_T Cuts at: 67 67 Size: 6176 SphI G_CATG'C Cuts at: 2488 3229 3729 2488 Size: 741 500 4935 Fragments arranged by size: 4935 741 500 SrfI GCCC'GGGC Cuts at: 741 1301 741 Size: 560 5616 StyI C'CwwG_G Cuts at: 701 1575 1772 1796 2438 2534 3310 3664 701 Size: 874 197 24 642 96 776 354 3213 Fragments arranged by size: 3213 874 776 642 354 197 96 24 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 366 1341 1568 1689 1737 3759 3892 4351 4560 Size: 975 227 121 48 2022 133 459 209 Cuts at: 4560 366 Size: 1982 Fragments arranged by size: 2022 1982 975 459 227 209 133 121 48 TatI w'GTAC_w Cuts at: 1113 5691 1113 Size: 4578 1598 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 482 514 5693 5725 482 Size: 32 5179 32 933 Fragments arranged by size: 5179 933 32 32 Tth111I GACn'n_nGTC Cuts at: 1086 3973 1086 Size: 2887 3289 XbaI T'CTAG_A Cuts at: 3207 3207 Size: 6176 XcmI CCAnnnn_n'nnnnTGG Cuts at: 758 3671 758 Size: 2913 3263 XmaI C'CCGG_G Cuts at: 494 739 1299 2390 2500 2557 3196 494 Size: 245 560 1091 110 57 639 3474 Fragments arranged by size: 3474 1091 639 560 245 110 57 ZraI GAC'GTC Cuts at: 219 219 Size: 6176 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AgeI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SnaBI SpeI SphI SrfI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI ZraI Enzymes that do not cut: AflII AhdI AleI AscI AvrII BaeI BcgI BfrBI BmtI BsiWI BsmI BsmBI BssHII BstEII ClaI EcoRV FseI FspAI HpaI MfeI NdeI NheI NotI NruI NsiI PacI PasI PsiI PspXI PsrI SacII SexAI SfiI SgrAI SspI StuI SwaI XhoI XmnI