Result of FASTA (ccds) for
pF1KSDA1552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1552, 715 aa
1>>>pF1KSDA1552 715 - 715 aa - 715 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8103+/-0.000878; mu= 14.7578+/- 0.053
mean_var=128.2672+/-25.745, 0's: 0 Z-trim(111.2): 6 B-trim: 5 in 1/50
Lambda= 0.113244
statistics sampled from 12185 (12188) to 12185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.374), width: 16
Scan time: 4.450
The best scores are: opt bits E(32554)
CCDS45390.1 FLYWCH1 gene_id:84256|Hs108|chr16 ( 715) 4976 824.5 0
CCDS76809.1 FLYWCH1 gene_id:84256|Hs108|chr16 ( 716) 4964 822.5 0
CCDS10482.1 FLYWCH2 gene_id:114984|Hs108|chr16 ( 140) 425 80.4 2.1e-15
>>CCDS45390.1 FLYWCH1 gene_id:84256|Hs108|chr16 (715 aa)
initn: 4976 init1: 4976 opt: 4976 Z-score: 4398.7 bits: 824.5 E(32554): 0
Smith-Waterman score: 4976; 100.0% identity (100.0% similar) in 715 aa overlap (1-715:1-715)
10 20 30 40 50 60
pF1KSD MPLPEPSEQEGESVKAGQEPSPKPGTDVIPAAPRKPREFSKLVLLTASDQDEDGVGSKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPLPEPSEQEGESVKAGQEPSPKPGTDVIPAAPRKPREFSKLVLLTASDQDEDGVGSKPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EVHCVLSLEMAGPATLASTLQILPVEEQGGVVQPALEMPEQKCSKLDAAPQSLEFLRTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVHCVLSLEMAGPATLASTLQILPVEEQGGVVQPALEMPEQKCSKLDAAPQSLEFLRTPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GGRLLVLESFLYKQEKAVGDKVYWKCRQHAELGCRGRAITRGLRATVMRGHCHAPDEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGRLLVLESFLYKQEKAVGDKVYWKCRQHAELGCRGRAITRGLRATVMRGHCHAPDEQGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD EARRQREKLPSLALPEGLGEPQGPEGPGGRVEEPLEGVGPWQCPEEPEPTPGLVLSKPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EARRQREKLPSLALPEGLGEPQGPEGPGGRVEEPLEGVGPWQCPEEPEPTPGLVLSKPAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EEEEAPRALSLLSLPPKKRSILGLGQARPLEFLRTCYGGSFLVHESFLYKREKAVGDKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEEEAPRALSLLSLPPKKRSILGLGQARPLEFLRTCYGGSFLVHESFLYKREKAVGDKVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD WTCRDHALHGCRSRAITQGQRVTVMRGHCHQPDMEGLEARRQQEKAVETLQAGQDGPGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WTCRDHALHGCRSRAITQGQRVTVMRGHCHQPDMEGLEARRQQEKAVETLQAGQDGPGSQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VDTLLRGVDSLLYRRGPGPLTLTRPRPRKRAKVEDQELPTQPEAPDEHQDMDADPGGPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VDTLLRGVDSLLYRRGPGPLTLTRPRPRKRAKVEDQELPTQPEAPDEHQDMDADPGGPEF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LKTPLGGSFLVYESFLYRREKAAGEKVYWTCRDQARMGCRSRAITQGRRVTVMRGHCHPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKTPLGGSFLVYESFLYRREKAAGEKVYWTCRDQARMGCRSRAITQGRRVTVMRGHCHPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DLGGLEALRQREKRPNTAQRGSPGGPEFLKTPLGGSFLVYESFLYRREKAAGEKVYWTCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DLGGLEALRQREKRPNTAQRGSPGGPEFLKTPLGGSFLVYESFLYRREKAAGEKVYWTCR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DQARMGCRSRAITQGRRVMVMRRHCHPPDLGGLEALRQREHFPNLAQWDSPDPLRPLEFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DQARMGCRSRAITQGRRVMVMRRHCHPPDLGGLEALRQREHFPNLAQWDSPDPLRPLEFL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD RTSLGGRFLVHESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRSHCHQPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RTSLGGRFLVHESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRSHCHQPD
610 620 630 640 650 660
670 680 690 700 710
pF1KSD LAGLEALRQRERLPTTAQQEDPEKIQVQLCFKTCSPESQQIYGDIKDVRLDGESQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAGLEALRQRERLPTTAQQEDPEKIQVQLCFKTCSPESQQIYGDIKDVRLDGESQ
670 680 690 700 710
>>CCDS76809.1 FLYWCH1 gene_id:84256|Hs108|chr16 (716 aa)
initn: 4262 init1: 4262 opt: 4964 Z-score: 4388.1 bits: 822.5 E(32554): 0
Smith-Waterman score: 4964; 99.9% identity (99.9% similar) in 716 aa overlap (1-715:1-716)
10 20 30 40 50 60
pF1KSD MPLPEPSEQEGESVKAGQEPSPKPGTDVIPAAPRKPREFSKLVLLTASDQDEDGVGSKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MPLPEPSEQEGESVKAGQEPSPKPGTDVIPAAPRKPREFSKLVLLTASDQDEDGVGSKPQ
10 20 30 40 50 60
70 80 90 100 110
pF1KSD EVHCVLSLEMAGPATLASTLQILPVEEQGGVVQPALEMPEQKCSKLDAA-PQSLEFLRTP
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS76 EVHCVLSLEMAGPATLASTLQILPVEEQGGVVQPALEMPEQKCSKLDAAAPQSLEFLRTP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD FGGRLLVLESFLYKQEKAVGDKVYWKCRQHAELGCRGRAITRGLRATVMRGHCHAPDEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FGGRLLVLESFLYKQEKAVGDKVYWKCRQHAELGCRGRAITRGLRATVMRGHCHAPDEQG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD LEARRQREKLPSLALPEGLGEPQGPEGPGGRVEEPLEGVGPWQCPEEPEPTPGLVLSKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEARRQREKLPSLALPEGLGEPQGPEGPGGRVEEPLEGVGPWQCPEEPEPTPGLVLSKPA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD LEEEEAPRALSLLSLPPKKRSILGLGQARPLEFLRTCYGGSFLVHESFLYKREKAVGDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEEEEAPRALSLLSLPPKKRSILGLGQARPLEFLRTCYGGSFLVHESFLYKREKAVGDKV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD YWTCRDHALHGCRSRAITQGQRVTVMRGHCHQPDMEGLEARRQQEKAVETLQAGQDGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YWTCRDHALHGCRSRAITQGQRVTVMRGHCHQPDMEGLEARRQQEKAVETLQAGQDGPGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD QVDTLLRGVDSLLYRRGPGPLTLTRPRPRKRAKVEDQELPTQPEAPDEHQDMDADPGGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QVDTLLRGVDSLLYRRGPGPLTLTRPRPRKRAKVEDQELPTQPEAPDEHQDMDADPGGPE
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD FLKTPLGGSFLVYESFLYRREKAAGEKVYWTCRDQARMGCRSRAITQGRRVTVMRGHCHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FLKTPLGGSFLVYESFLYRREKAAGEKVYWTCRDQARMGCRSRAITQGRRVTVMRGHCHP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD PDLGGLEALRQREKRPNTAQRGSPGGPEFLKTPLGGSFLVYESFLYRREKAAGEKVYWTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PDLGGLEALRQREKRPNTAQRGSPGGPEFLKTPLGGSFLVYESFLYRREKAAGEKVYWTC
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD RDQARMGCRSRAITQGRRVMVMRRHCHPPDLGGLEALRQREHFPNLAQWDSPDPLRPLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RDQARMGCRSRAITQGRRVMVMRRHCHPPDLGGLEALRQREHFPNLAQWDSPDPLRPLEF
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD LRTSLGGRFLVHESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRSHCHQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LRTSLGGRFLVHESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRSHCHQP
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD DLAGLEALRQRERLPTTAQQEDPEKIQVQLCFKTCSPESQQIYGDIKDVRLDGESQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DLAGLEALRQRERLPTTAQQEDPEKIQVQLCFKTCSPESQQIYGDIKDVRLDGESQ
670 680 690 700 710
>>CCDS10482.1 FLYWCH2 gene_id:114984|Hs108|chr16 (140 aa)
initn: 427 init1: 391 opt: 425 Z-score: 390.2 bits: 80.4 E(32554): 2.1e-15
Smith-Waterman score: 425; 61.7% identity (78.3% similar) in 115 aa overlap (1-114:1-113)
10 20 30 40 50 60
pF1KSD MPLPEPSEQEGESVKAGQEPSPKPGTDVIPAAPRKPREFSKLVLLTASDQDEDGVGSKPQ
::::::::::::::::.:::::::::.::::::::::.:::::::::: .. .:.: .
CCDS10 MPLPEPSEQEGESVKASQEPSPKPGTEVIPAAPRKPRKFSKLVLLTASKDSTKVAGAKRK
10 20 30 40 50 60
70 80 90 100 110
pF1KSD EVHCVLSLEMAGPATLASTL-QILPVEEQGGVVQPALEMPEQKCSKLDAAPQSLEFLRTP
::::.:: . ::::::..: : : : ... : . :::: :. : . . :
CCDS10 GVHCVMSLGVPGPATLAKALLQTHP--EAQRAIEAAPQEPEQKRSRQDPGTDRTEDSGLA
70 80 90 100 110
120 130 140 150 160 170
pF1KSD FGGRLLVLESFLYKQEKAVGDKVYWKCRQHAELGCRGRAITRGLRATVMRGHCHAPDEQG
CCDS10 AGPPEAAGENFAPCSVAPGKSL
120 130 140
715 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:37:53 2016 done: Thu Nov 3 06:37:54 2016
Total Scan time: 4.450 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]