FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1581, 492 aa
  1>>>pF1KSDA1581 492 - 492 aa - 492 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9280+/-0.00115; mu= 19.3505+/- 0.069
 mean_var=53.9097+/-11.042, 0's: 0 Z-trim(100.0): 28  B-trim: 0 in 0/47
 Lambda= 0.174679
 statistics sampled from 5946 (5956) to 5946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.53), E-opt: 0.2 (0.183), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS3885.1 ANKH gene_id:56172|Hs108|chr5           ( 492) 3210 817.5       0


>>CCDS3885.1 ANKH gene_id:56172|Hs108|chr5                (492 aa)
 initn: 3210 init1: 3210 opt: 3210  Z-score: 4367.2  bits: 817.5 E(32554):    0
Smith-Waterman score: 3210; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)

               10        20        30        40        50        60
pF1KSD MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LGVHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LGVHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEE
              430       440       450       460       470       480

              490  
pF1KSD VTDIVEMREENE
       ::::::::::::
CCDS38 VTDIVEMREENE
              490  




492 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:43:18 2016 done: Thu Nov  3 06:43:18 2016
 Total Scan time:  2.890 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]