FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1581, 492 aa
  1>>>pF1KSDA1581 492 - 492 aa - 492 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1904+/-0.000468; mu= 23.4673+/- 0.029
 mean_var=49.1117+/- 9.925, 0's: 0 Z-trim(106.4): 56  B-trim: 0 in 0/51
 Lambda= 0.183013
 statistics sampled from 14486 (14526) to 14486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.506), E-opt: 0.2 (0.17), width:  16
 Scan time:  8.800

The best scores are:                                      opt bits E(85289)
NP_473368 (OMIM: 118600,123000,605145) progressive ( 492) 3210 855.8       0
XP_016865133 (OMIM: 118600,123000,605145) PREDICTE ( 464) 2989 797.4       0
XP_011512369 (OMIM: 118600,123000,605145) PREDICTE ( 350) 2211 591.9 9.9e-169


>>NP_473368 (OMIM: 118600,123000,605145) progressive ank  (492 aa)
 initn: 3210 init1: 3210 opt: 3210  Z-score: 4573.7  bits: 855.8 E(85289):    0
Smith-Waterman score: 3210; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)

               10        20        30        40        50        60
pF1KSD MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 FAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LGVHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 LGVHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEE
              430       440       450       460       470       480

              490  
pF1KSD VTDIVEMREENE
       ::::::::::::
NP_473 VTDIVEMREENE
              490  

>>XP_016865133 (OMIM: 118600,123000,605145) PREDICTED: p  (464 aa)
 initn: 2989 init1: 2989 opt: 2989  Z-score: 4258.7  bits: 797.4 E(85289):    0
Smith-Waterman score: 2989; 100.0% identity (100.0% similar) in 460 aa overlap (33-492:5-464)

             10        20        30        40        50        60  
pF1KSD KFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMKFF
                                     ::::::::::::::::::::::::::::::
XP_016                           MTNCALNRGIAAVKEDAVEMLASYGLAYSLMKFF
                                         10        20        30    

             70        80        90       100       110       120  
pF1KSD TGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHVDE
           40        50        60        70        80        90    

            130       140       150       160       170       180  
pF1KSD SVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILLHS
          100       110       120       130       140       150    

            190       200       210       220       230       240  
pF1KSD HLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSFWW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSFWW
          160       170       180       190       200       210    

            250       260       270       280       290       300  
pF1KSD PLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPA
          220       230       240       250       260       270    

            310       320       330       340       350       360  
pF1KSD FDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVDFA
          280       290       300       310       320       330    

            370       380       390       400       410       420  
pF1KSD FAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPYLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPYLG
          340       350       360       370       380       390    

            430       440       450       460       470       480  
pF1KSD VHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEEVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESATEGEDSAMTDMPPTEEVT
          400       410       420       430       440       450    

            490  
pF1KSD DIVEMREENE
       ::::::::::
XP_016 DIVEMREENE
          460    

>>XP_011512369 (OMIM: 118600,123000,605145) PREDICTED: p  (350 aa)
 initn: 2211 init1: 2211 opt: 2211  Z-score: 3150.3  bits: 591.9 E(85289): 9.9e-169
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KSD MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DESVGSKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVD
       :::::::::::::::::::::::::::::::::::::                       
XP_011 PAFDKNNPSNKLVSTSNTVTAAHIKKFTFVCMALSLTALSPCGIPGPSVC          
              310       320       330       340       350          

              370       380       390       400       410       420
pF1KSD FAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLIASLVVLPY




492 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:43:18 2016 done: Thu Nov  3 06:43:20 2016
 Total Scan time:  8.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]