Result of FASTA (omim) for
pF1KSDA1589
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1589, 777 aa
1>>>pF1KSDA1589 777 - 777 aa - 777 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6744+/-0.000453; mu= 15.1970+/- 0.028
mean_var=145.2248+/-32.074, 0's: 0 Z-trim(114.5): 164 B-trim: 921 in 1/52
Lambda= 0.106428
statistics sampled from 24232 (24440) to 24232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.287), width: 16
Scan time: 12.290
The best scores are: opt bits E(85289)
NP_067083 (OMIM: 605471) zinc finger FYVE domain-c ( 777) 5437 847.5 0
NP_001268663 (OMIM: 605471) zinc finger FYVE domai ( 763) 3467 545.0 4.4e-154
NP_848535 (OMIM: 605471) zinc finger FYVE domain-c ( 362) 2631 416.3 1.1e-115
NP_001268664 (OMIM: 605471) zinc finger FYVE domai ( 362) 2631 416.3 1.1e-115
XP_016876862 (OMIM: 605471) PREDICTED: zinc finger ( 362) 2631 416.3 1.1e-115
XP_016865384 (OMIM: 610327) PREDICTED: RUN and FYV ( 310) 252 51.0 9.2e-06
XP_006714985 (OMIM: 610327) PREDICTED: RUN and FYV ( 368) 252 51.1 1e-05
XP_016865383 (OMIM: 610327) PREDICTED: RUN and FYV ( 368) 252 51.1 1e-05
XP_016865382 (OMIM: 610327) PREDICTED: RUN and FYV ( 416) 252 51.1 1.1e-05
XP_016865381 (OMIM: 610327) PREDICTED: RUN and FYV ( 438) 252 51.1 1.2e-05
XP_005266050 (OMIM: 610327) PREDICTED: RUN and FYV ( 465) 252 51.2 1.2e-05
XP_016865380 (OMIM: 610327) PREDICTED: RUN and FYV ( 578) 252 51.3 1.4e-05
NP_001035542 (OMIM: 610327) RUN and FYVE domain-co ( 600) 252 51.3 1.5e-05
NP_001035541 (OMIM: 610327) RUN and FYVE domain-co ( 600) 252 51.3 1.5e-05
XP_006714984 (OMIM: 610327) PREDICTED: RUN and FYV ( 686) 252 51.3 1.6e-05
NP_079434 (OMIM: 610327) RUN and FYVE domain-conta ( 708) 252 51.3 1.6e-05
XP_005270014 (OMIM: 610328) PREDICTED: RUN and FYV ( 572) 239 49.3 5.6e-05
XP_005270013 (OMIM: 610328) PREDICTED: RUN and FYV ( 585) 239 49.3 5.7e-05
XP_005270012 (OMIM: 610328) PREDICTED: RUN and FYV ( 590) 239 49.3 5.8e-05
XP_011538244 (OMIM: 610328) PREDICTED: RUN and FYV ( 606) 239 49.3 5.9e-05
NP_001317032 (OMIM: 610328) RUN and FYVE domain-co ( 606) 239 49.3 5.9e-05
XP_005270010 (OMIM: 610328) PREDICTED: RUN and FYV ( 607) 239 49.3 5.9e-05
NP_060457 (OMIM: 610328) RUN and FYVE domain-conta ( 641) 239 49.3 6.1e-05
XP_016863994 (OMIM: 614176) PREDICTED: lateral sig ( 773) 234 48.6 0.00012
NP_001166130 (OMIM: 614176) lateral signaling targ ( 817) 234 48.6 0.00012
NP_001166127 (OMIM: 614176) lateral signaling targ ( 857) 234 48.7 0.00013
NP_066023 (OMIM: 614176) lateral signaling target ( 887) 234 48.7 0.00013
XP_016880786 (OMIM: 604375) PREDICTED: hepatocyte ( 768) 228 47.7 0.00022
XP_011523765 (OMIM: 604375) PREDICTED: hepatocyte ( 777) 228 47.7 0.00023
NP_004703 (OMIM: 604375) hepatocyte growth factor- ( 777) 228 47.7 0.00023
NP_004678 (OMIM: 603559) myotubularin-related prot (1195) 228 47.9 0.00031
XP_006722231 (OMIM: 603559) PREDICTED: myotubulari (1195) 228 47.9 0.00031
XP_005257843 (OMIM: 603559) PREDICTED: myotubulari (1195) 228 47.9 0.00031
XP_005257842 (OMIM: 603559) PREDICTED: myotubulari (1199) 228 47.9 0.00031
XP_011523762 (OMIM: 603559) PREDICTED: myotubulari (1199) 228 47.9 0.00031
XP_005257841 (OMIM: 603559) PREDICTED: myotubulari (1209) 228 47.9 0.00031
NP_694691 (OMIM: 603558) myotubularin-related prot (1161) 222 46.9 0.00057
XP_016884521 (OMIM: 603558) PREDICTED: myotubulari (1161) 222 46.9 0.00057
XP_005261865 (OMIM: 603558) PREDICTED: myotubulari (1174) 222 46.9 0.00057
NP_066576 (OMIM: 603558) myotubularin-related prot (1198) 222 47.0 0.00058
XP_016884520 (OMIM: 603558) PREDICTED: myotubulari (1207) 222 47.0 0.00059
XP_005261862 (OMIM: 603558) PREDICTED: myotubulari (1211) 222 47.0 0.00059
XP_016884518 (OMIM: 603558) PREDICTED: myotubulari (1244) 222 47.0 0.0006
NP_001171471 (OMIM: 121850,609414) 1-phosphatidyli ( 548) 211 44.9 0.0011
NP_076976 (OMIM: 613504) zinc finger FYVE domain-c ( 234) 201 43.0 0.0017
NP_001185882 (OMIM: 613504) zinc finger FYVE domai ( 252) 201 43.1 0.0018
XP_011537117 (OMIM: 605070) PREDICTED: early endos (1365) 212 45.5 0.0019
NP_003557 (OMIM: 605070) early endosome antigen 1 (1411) 212 45.5 0.0019
XP_016875507 (OMIM: 605070) PREDICTED: early endos (1417) 212 45.5 0.0019
XP_011537116 (OMIM: 605070) PREDICTED: early endos (1453) 212 45.5 0.0019
>>NP_067083 (OMIM: 605471) zinc finger FYVE domain-conta (777 aa)
initn: 5437 init1: 5437 opt: 5437 Z-score: 4522.0 bits: 847.5 E(85289): 0
Smith-Waterman score: 5437; 100.0% identity (100.0% similar) in 777 aa overlap (1-777:1-777)
10 20 30 40 50 60
pF1KSD MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
670 680 690 700 710 720
730 740 750 760 770
pF1KSD CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
730 740 750 760 770
>>NP_001268663 (OMIM: 605471) zinc finger FYVE domain-co (763 aa)
initn: 3755 init1: 3467 opt: 3467 Z-score: 2887.3 bits: 545.0 E(85289): 4.4e-154
Smith-Waterman score: 5294; 98.2% identity (98.2% similar) in 777 aa overlap (1-777:1-763)
10 20 30 40 50 60
pF1KSD MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
:::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 EVSVVPKTSASTDSPWMGLAKYAWSG--------------RQYWFGNQDPVDTVVRTEIV
490 500 510 520
550 560 570 580 590 600
pF1KSD HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
590 600 610 620 630 640
670 680 690 700 710 720
pF1KSD QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
650 660 670 680 690 700
730 740 750 760 770
pF1KSD CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
710 720 730 740 750 760
>>NP_848535 (OMIM: 605471) zinc finger FYVE domain-conta (362 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 2197.7 bits: 416.3 E(85289): 1.1e-115
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 362 aa overlap (416-777:1-362)
390 400 410 420 430 440
pF1KSD TTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
::::::::::::::::::::::::::::::
NP_848 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
10 20 30
450 460 470 480 490 500
pF1KSD HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
40 50 60 70 80 90
510 520 530 540 550 560
pF1KSD GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
100 110 120 130 140 150
570 580 590 600 610 620
pF1KSD FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
160 170 180 190 200 210
630 640 650 660 670 680
pF1KSD GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
220 230 240 250 260 270
690 700 710 720 730 740
pF1KSD QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
280 290 300 310 320 330
750 760 770
pF1KSD DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::::::::::::::::::::::::::::::
NP_848 DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
340 350 360
>>NP_001268664 (OMIM: 605471) zinc finger FYVE domain-co (362 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 2197.7 bits: 416.3 E(85289): 1.1e-115
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 362 aa overlap (416-777:1-362)
390 400 410 420 430 440
pF1KSD TTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
::::::::::::::::::::::::::::::
NP_001 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
10 20 30
450 460 470 480 490 500
pF1KSD HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
40 50 60 70 80 90
510 520 530 540 550 560
pF1KSD GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
100 110 120 130 140 150
570 580 590 600 610 620
pF1KSD FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
160 170 180 190 200 210
630 640 650 660 670 680
pF1KSD GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
220 230 240 250 260 270
690 700 710 720 730 740
pF1KSD QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
280 290 300 310 320 330
750 760 770
pF1KSD DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::::::::::::::::::::::::::::::
NP_001 DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
340 350 360
>>XP_016876862 (OMIM: 605471) PREDICTED: zinc finger FYV (362 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 2197.7 bits: 416.3 E(85289): 1.1e-115
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 362 aa overlap (416-777:1-362)
390 400 410 420 430 440
pF1KSD TTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
::::::::::::::::::::::::::::::
XP_016 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
10 20 30
450 460 470 480 490 500
pF1KSD HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
40 50 60 70 80 90
510 520 530 540 550 560
pF1KSD GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
100 110 120 130 140 150
570 580 590 600 610 620
pF1KSD FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
160 170 180 190 200 210
630 640 650 660 670 680
pF1KSD GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
220 230 240 250 260 270
690 700 710 720 730 740
pF1KSD QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
280 290 300 310 320 330
750 760 770
pF1KSD DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::::::::::::::::::::::::::::::
XP_016 DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
340 350 360
>>XP_016865384 (OMIM: 610327) PREDICTED: RUN and FYVE do (310 aa)
initn: 237 init1: 210 opt: 252 Z-score: 224.5 bits: 51.0 E(85289): 9.2e-06
Smith-Waterman score: 252; 47.8% identity (72.5% similar) in 69 aa overlap (703-771:232-298)
680 690 700 710 720 730
pF1KSD GGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKL
:..: . :. : : ::..:.:::::.
XP_016 QKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISR
210 220 230 240 250 260
740 750 760 770
pF1KSD SKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::: ::. ::. :: .. :.:: . .::::: .:.
XP_016 RKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCSSTAS
270 280 290 300 310
>>XP_006714985 (OMIM: 610327) PREDICTED: RUN and FYVE do (368 aa)
initn: 237 init1: 210 opt: 252 Z-score: 223.5 bits: 51.1 E(85289): 1e-05
Smith-Waterman score: 252; 47.8% identity (72.5% similar) in 69 aa overlap (703-771:290-356)
680 690 700 710 720 730
pF1KSD GGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKL
:..: . :. : : ::..:.:::::.
XP_006 QKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISR
260 270 280 290 300 310
740 750 760 770
pF1KSD SKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::: ::. ::. :: .. :.:: . .::::: .:.
XP_006 RKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCSSTAS
320 330 340 350 360
>>XP_016865383 (OMIM: 610327) PREDICTED: RUN and FYVE do (368 aa)
initn: 237 init1: 210 opt: 252 Z-score: 223.5 bits: 51.1 E(85289): 1e-05
Smith-Waterman score: 252; 47.8% identity (72.5% similar) in 69 aa overlap (703-771:290-356)
680 690 700 710 720 730
pF1KSD GGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKL
:..: . :. : : ::..:.:::::.
XP_016 QKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISR
260 270 280 290 300 310
740 750 760 770
pF1KSD SKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::: ::. ::. :: .. :.:: . .::::: .:.
XP_016 RKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCSSTAS
320 330 340 350 360
>>XP_016865382 (OMIM: 610327) PREDICTED: RUN and FYVE do (416 aa)
initn: 237 init1: 210 opt: 252 Z-score: 222.8 bits: 51.1 E(85289): 1.1e-05
Smith-Waterman score: 252; 47.8% identity (72.5% similar) in 69 aa overlap (703-771:338-404)
680 690 700 710 720 730
pF1KSD GGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKL
:..: . :. : : ::..:.:::::.
XP_016 QKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISR
310 320 330 340 350 360
740 750 760 770
pF1KSD SKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::: ::. ::. :: .. :.:: . .::::: .:.
XP_016 RKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCSSTAS
370 380 390 400 410
>>XP_016865381 (OMIM: 610327) PREDICTED: RUN and FYVE do (438 aa)
initn: 237 init1: 210 opt: 252 Z-score: 222.6 bits: 51.1 E(85289): 1.2e-05
Smith-Waterman score: 252; 47.8% identity (72.5% similar) in 69 aa overlap (703-771:360-426)
680 690 700 710 720 730
pF1KSD GGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKL
:..: . :. : : ::..:.:::::.
XP_016 QKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISR
330 340 350 360 370 380
740 750 760 770
pF1KSD SKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
::::: ::. ::. :: .. :.:: . .::::: .:.
XP_016 RKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCSSTAS
390 400 410 420 430
777 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:45:50 2016 done: Thu Nov 3 06:45:52 2016
Total Scan time: 12.290 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]