Result of FASTA (ccds) for
pF1KSDA1605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1605, 877 aa
1>>>pF1KSDA1605 877 - 877 aa - 877 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2699+/-0.000886; mu= 21.1801+/- 0.053
mean_var=69.9956+/-13.779, 0's: 0 Z-trim(106.2): 11 B-trim: 14 in 2/50
Lambda= 0.153299
statistics sampled from 8836 (8840) to 8836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.272), width: 16
Scan time: 4.120
The best scores are: opt bits E(32554)
CCDS83363.1 GBA2 gene_id:57704|Hs108|chr9 ( 877) 6169 1374.0 0
CCDS6589.1 GBA2 gene_id:57704|Hs108|chr9 ( 927) 5888 1311.9 0
>>CCDS83363.1 GBA2 gene_id:57704|Hs108|chr9 (877 aa)
initn: 6169 init1: 6169 opt: 6169 Z-score: 7365.8 bits: 1374.0 E(32554): 0
Smith-Waterman score: 6169; 100.0% identity (100.0% similar) in 877 aa overlap (1-877:1-877)
10 20 30 40 50 60
pF1KSD MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLPSG
790 800 810 820 830 840
850 860 870
pF1KSD FCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS
:::::::::::::::::::::::::::::::::::::
CCDS83 FCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS
850 860 870
>>CCDS6589.1 GBA2 gene_id:57704|Hs108|chr9 (927 aa)
initn: 5886 init1: 5886 opt: 5888 Z-score: 7029.5 bits: 1311.9 E(32554): 0
Smith-Waterman score: 5888; 99.5% identity (99.5% similar) in 842 aa overlap (1-841:1-842)
10 20 30 40 50 60
pF1KSD MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
730 740 750 760 770 780
790 800 810 820 830
pF1KSD ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLP-S
::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS65 ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWE
790 800 810 820 830 840
840 850 860 870
pF1KSD GFCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS
::
CCDS65 GFQTAEGCYRTVWERLGLAFQTPEAYCQQRVFRSLAYMRPLSIWAMQLALQQQQHKKASW
850 860 870 880 890 900
877 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:47:17 2016 done: Thu Nov 3 06:47:18 2016
Total Scan time: 4.120 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]