FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1609, 456 aa
  1>>>pF1KSDA1609 456 - 456 aa - 456 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5542+/-0.000866; mu= 16.0212+/- 0.052
 mean_var=64.6718+/-13.268, 0's: 0 Z-trim(106.6): 23  B-trim: 309 in 1/49
 Lambda= 0.159484
 statistics sampled from 9056 (9074) to 9056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS32498.1 TLDC1 gene_id:57707|Hs108|chr16        ( 456) 3107 723.7 9.4e-209
CCDS33465.1 TLDC2 gene_id:140711|Hs108|chr20       ( 215)  246 65.3   7e-11


>>CCDS32498.1 TLDC1 gene_id:57707|Hs108|chr16             (456 aa)
 initn: 3107 init1: 3107 opt: 3107  Z-score: 3861.3  bits: 723.7 E(32554): 9.4e-209
Smith-Waterman score: 3107; 99.3% identity (99.8% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KSD MGNSRSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGNSRSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLMIMKMISATEGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLMIMKMISATEGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKEAPGPNPRVQVLAAQLLSEMKLQDGKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS32 VKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKEAPGPNPRVQVLAAQLLSDMKLQDGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLGPQWLDYDCDRAVIEDWVFRVPHVAIFLSVVICKGFLVLCSSLDLTTLVPERQVDQGR
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS32 LLGPQWLDYDCDRAVIEDWVFRVPHVAIFLSVVICKGFLILCSSLDLTTLVPERQVDQGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GFESILDVLSVMYINAQLPREQRHRWRLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHD
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS32 GFESILDVLSVMYINAQLPREQRHRWCLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD MGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWAVGDPSEEQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWAVGDPSEEQLA
              370       380       390       400       410       420

              430       440       450      
pF1KSD KGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE
       ::::::::::::::::::::::::::::::::::::
CCDS32 KGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE
              430       440       450      

>>CCDS33465.1 TLDC2 gene_id:140711|Hs108|chr20            (215 aa)
 initn: 219 init1: 148 opt: 246  Z-score: 308.8  bits: 65.3 E(32554): 7e-11
Smith-Waterman score: 292; 34.2% identity (64.5% similar) in 152 aa overlap (259-409:70-212)

      230       240       250       260       270       280        
pF1KSD TLVPERQVDQGRGFESILDVLSVMYINAQLPREQRHRWRLLFSSELHGHSFSQLCGHITH
                                     ::   : : :.: .   : :...:  ..  
CCDS33 APEDPTVPQLTEASQVLSASEIRQLSFHFPPRVTGHPWSLVFCTSRDGFSLQSLYRRMEG
      40        50        60        70        80        90         

       290       300       310       320       330       340       
pF1KSD -RGPCVAVLEDHDKHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMY
         :: . ::.:.: ..::.:.: . ...  : : .. ::::. :.. :.  :: :. .. 
CCDS33 CSGPVLLVLRDQDGQIFGAFSSSAIRLSKGFYGTGETFLFSFSPQLKVFKWTGSNSFFV-
     100       110       120       130       140       150         

       350       360       370       380       390       400       
pF1KSD LNHGQQTIPNGLGMGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKME
         .:.    ..: ::.  . ::::.: :. .: :  .: : :.:.  :. ::.: ....:
CCDS33 --KGDL---DSLMMGSGSGRFGLWLDGDLFRGGS--SP-CPTFNNEVLARQEQFCIQELE
        160          170       180          190       200       210

       410       420       430       440       450      
pF1KSD VWAVGDPSEEQLAKGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE
       .:                                               
CCDS33 AWLLS                                            
                                                        




456 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:48:16 2016 done: Thu Nov  3 06:48:16 2016
 Total Scan time:  3.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]