FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1663, 344 aa
  1>>>pF1KSDA1663 344 - 344 aa - 344 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9373+/-0.000798; mu= 5.8785+/- 0.048
 mean_var=159.8257+/-32.395, 0's: 0 Z-trim(113.1): 11  B-trim: 0 in 0/53
 Lambda= 0.101450
 statistics sampled from 13796 (13806) to 13796 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.424), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22         ( 344) 2300 347.9 7.2e-96
CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17         ( 345) 1159 180.9 1.3e-45


>>CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22              (344 aa)
 initn: 2300 init1: 2300 opt: 2300  Z-score: 1834.7  bits: 347.9 E(32554): 7.2e-96
Smith-Waterman score: 2300; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KSD MQLEIKVALNFIISYLYNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQLEIKVALNFIISYLYNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLYLDDSEGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLYLDDSEGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSPSPTFIPRSAQPITFTTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSPSPTFIPRSAQPITFTTAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FAATKFGSTKMKKGGGAASGGGVASSGAGGQQPPQQPRMARSPTNSLLKHKSLSLSMHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FAATKFGSTKMKKGGGAASGGGVASSGAGGQQPPQQPRMARSPTNSLLKHKSLSLSMHSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NFITANPAPQSQLSPNAKEFVYNGGGSPSLFFDAADGQGSGTPGPFGGSGAGTCNSSSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NFITANPAPQSQLSPNAKEFVYNGGGSPSLFFDAADGQGSGTPGPFGGSGAGTCNSSSFD
              250       260       270       280       290       300

              310       320       330       340    
pF1KSD MAQVFGGGANSLFLEKTPFVEGLSYNLNTMQYPSQQFQPVVLAN
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAQVFGGGANSLFLEKTPFVEGLSYNLNTMQYPSQQFQPVVLAN
              310       320       330       340    

>>CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17              (345 aa)
 initn: 1084 init1: 680 opt: 1159  Z-score: 932.1  bits: 180.9 E(32554): 1.3e-45
Smith-Waterman score: 1197; 55.7% identity (73.5% similar) in 377 aa overlap (1-344:1-345)

               10        20        30        40        50        60
pF1KSD MQLEIKVALNFIISYLYNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHI
       :::::.::::::::::::::::::...:::::::::::::::::::::: :::::::.::
CCDS11 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KSD GEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLYLDDSE--
       :: ::::.: :.:.::: ..:::.:.:..:::::::::::::::::: :::::.::..  
CCDS11 GEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNEN
               70        80        90       100       110       120

      120       130       140       150       160         170      
pF1KSD GCGAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSP--SPTFIPRSAQPITF
       ::   :::::::.::::.::::.::..  ::.:.:::: ::.:   ::::.:::.::.::
CCDS11 GC---ELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTF
                 130       140       150       160       170       

        180       190       200       210       220       230      
pF1KSD TTASFAATKFGSTKMKKGGGAASGGGVASSGAGGQQPPQQPRMARSPTNSLLKHKSLSLS
       :::.::::::::::::..:    .. :: .         .:      .:.:::.:..: :
CCDS11 TTATFAATKFGSTKMKNSG---RSNKVART---------SPINLGLNVNDLLKQKAISSS
       180       190          200                210       220     

        240                         250              260       270 
pF1KSD MHSLNFITAN------------------PAPQSQ-------LSPNAKEFVYNGGGSPSLF
       ::::  .  .                  : ::.:       ::::::::..     :.. 
CCDS11 MHSLYGLGLGSQQQPQQQQQPAQPPPPPPPPQQQQQQKTSALSPNAKEFIF-----PNM-
         230       240       250       260       270               

             280       290           300       310       320       
pF1KSD FDAADGQGSGTPGPFGGSGAGTCN----SSSFDMAQVFGGGANSLFLEKTPFVEGLSYNL
           .::::.: : : :..  . .    :..::.  ..::      :..  ::.::...:
CCDS11 ----QGQGSSTNGMFPGDSPLNLSPLQYSNAFDVFAAYGG------LNEKSFVDGLNFSL
         280       290       300       310             320         

       330       340    
pF1KSD NTMQYPSQQFQPVVLAN
       :.::: .:::::: .::
CCDS11 NNMQYSNQQFQPV-MAN
     330       340      




344 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:52:17 2016 done: Thu Nov  3 06:52:18 2016
 Total Scan time:  3.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]