FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1674, 530 aa
  1>>>pF1KSDA1674 530 - 530 aa - 530 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1916+/-0.00104; mu= 1.1898+/- 0.062
 mean_var=239.9980+/-49.588, 0's: 0 Z-trim(112.0): 42  B-trim: 564 in 1/51
 Lambda= 0.082789
 statistics sampled from 12812 (12843) to 12812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.395), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS31316.1 LRRC27 gene_id:80313|Hs108|chr10       ( 530) 3467 427.3 2.1e-119
CCDS44495.1 LRRC27 gene_id:80313|Hs108|chr10       ( 383) 2355 294.4 1.6e-79
CCDS44496.1 LRRC27 gene_id:80313|Hs108|chr10       ( 383) 2065 259.8 4.2e-69


>>CCDS31316.1 LRRC27 gene_id:80313|Hs108|chr10            (530 aa)
 initn: 3467 init1: 3467 opt: 3467  Z-score: 2257.2  bits: 427.3 E(32554): 2.1e-119
Smith-Waterman score: 3467; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKAAEDLEIATELQDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKAAEDLEIATELQDEV
              430       440       450       460       470       480

              490       500       510       520       530
pF1KSD LKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNVRRYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNVRRYQ
              490       500       510       520       530

>>CCDS44495.1 LRRC27 gene_id:80313|Hs108|chr10            (383 aa)
 initn: 2355 init1: 2355 opt: 2355  Z-score: 1541.3  bits: 294.4 E(32554): 1.6e-79
Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)

               10        20        30        40        50        60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS44 LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRRPF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
                                                                   
CCDS44 LLIFPRVFQALTRSSGRFILVLL                                     
              370       380                                        

>>CCDS44496.1 LRRC27 gene_id:80313|Hs108|chr10            (383 aa)
 initn: 2092 init1: 2060 opt: 2065  Z-score: 1354.2  bits: 259.8 E(32554): 4.2e-69
Smith-Waterman score: 2065; 83.5% identity (90.2% similar) in 387 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
              250       260       270       280       290       300

              310         320       330         340       350      
pF1KSD LPKPRHVFRRKTASSRSI--LPDLLSPYQMAI-RAK-RLEESRAAALRELQEKQALMEQQ
       ::::::::: ..  ....  : .  .  . .. ::  .. :.:          .    . 
CCDS44 LPKPRHVFRTRVPRKQALQRLHERKTRIMGVVGRAPTHMGEGRQPPPGASYPTSCHRTKW
              310       320       330       340       350       360

        360       370       380       390       400       410      
pF1KSD RREKRALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMK
       : :..   .:. ::.: :... . :.:                                 
CCDS44 RSEQK---DWK-RAERRRSESSRRSRL                                 
                  370       380                                    




530 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:54:10 2016 done: Thu Nov  3 06:54:11 2016
 Total Scan time:  3.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]