FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1704, 340 aa
  1>>>pF1KSDA1704 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8534+/-0.000817; mu= 2.0492+/- 0.050
 mean_var=203.3951+/-40.184, 0's: 0 Z-trim(115.2): 3  B-trim: 0 in 0/51
 Lambda= 0.089930
 statistics sampled from 15784 (15786) to 15784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.485), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS9394.1 GPALPP1 gene_id:55425|Hs108|chr13       ( 340) 2286 308.3 5.8e-84


>>CCDS9394.1 GPALPP1 gene_id:55425|Hs108|chr13            (340 aa)
 initn: 2286 init1: 2286 opt: 2286  Z-score: 1620.9  bits: 308.3 E(32554): 5.8e-84
Smith-Waterman score: 2286; 99.7% identity (99.7% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KSD MARDLIGPALPPGFKARGTAEDEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MARDLIGPALPPGFKARGTAEDEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAKGPVNYNVTTEFEKRAQRMKEKLTKGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAKGPVNYNVTTEFEKRAQRMKEKLTKGDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DSSKPIVRESWMTELPPEMKDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DSSKPIVRESWMTELPPEMKDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RKSSSKKDEEHILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKLQERIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS93 RKSSSKKDEEHILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKPQERIP
              250       260       270       280       290       300

              310       320       330       340
pF1KSD FDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL
       ::::::::::::::::::::::::::::::::::::::::
CCDS93 FDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL
              310       320       330       340




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:58:30 2016 done: Thu Nov  3 06:58:31 2016
 Total Scan time:  3.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]