Result of FASTA (omim) for
pF1KSDA1709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1709, 1025 aa
1>>>pF1KSDA1709 1025 - 1025 aa - 1025 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7822+/-0.000413; mu= 19.9717+/- 0.026
mean_var=92.5969+/-18.324, 0's: 0 Z-trim(112.5): 17 B-trim: 0 in 0/52
Lambda= 0.133283
statistics sampled from 21404 (21415) to 21404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.251), width: 16
Scan time: 13.430
The best scores are: opt bits E(85289)
NP_078938 (OMIM: 609221) RNA cytidine acetyltransf (1025) 6677 1295.2 0
NP_001137502 (OMIM: 609221) RNA cytidine acetyltra ( 953) 6202 1203.8 0
>>NP_078938 (OMIM: 609221) RNA cytidine acetyltransferas (1025 aa)
initn: 6677 init1: 6677 opt: 6677 Z-score: 6937.1 bits: 1295.2 E(85289): 0
Smith-Waterman score: 6677; 100.0% identity (100.0% similar) in 1025 aa overlap (1-1025:1-1025)
10 20 30 40 50 60
pF1KSD MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHEVSLQESIRYAPGDAVEKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHEVSLQESIRYAPGDAVEKW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
970 980 990 1000 1010 1020
pF1KSD LKRKK
:::::
NP_078 LKRKK
>>NP_001137502 (OMIM: 609221) RNA cytidine acetyltransfe (953 aa)
initn: 6202 init1: 6202 opt: 6202 Z-score: 6444.0 bits: 1203.8 E(85289): 0
Smith-Waterman score: 6202; 100.0% identity (100.0% similar) in 953 aa overlap (73-1025:1-953)
50 60 70 80 90 100
pF1KSD MLSKATVKARPSVLWCYKKELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNI
::::::::::::::::::::::::::::::
NP_001 MRQLQKKIKNGTLNIKQDDPFELFIAATNI
10 20 30
110 120 130 140 150 160
pF1KSD RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
40 50 60 70 80 90
170 180 190 200 210 220
pF1KSD VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KSD TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
160 170 180 190 200 210
290 300 310 320 330 340
pF1KSD TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
220 230 240 250 260 270
350 360 370 380 390 400
pF1KSD IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
280 290 300 310 320 330
410 420 430 440 450 460
pF1KSD GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHE
340 350 360 370 380 390
470 480 490 500 510 520
pF1KSD VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
400 410 420 430 440 450
530 540 550 560 570 580
pF1KSD EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
460 470 480 490 500 510
590 600 610 620 630 640
pF1KSD GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
520 530 540 550 560 570
650 660 670 680 690 700
pF1KSD RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
580 590 600 610 620 630
710 720 730 740 750 760
pF1KSD AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
640 650 660 670 680 690
770 780 790 800 810 820
pF1KSD WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
700 710 720 730 740 750
830 840 850 860 870 880
pF1KSD KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
760 770 780 790 800 810
890 900 910 920 930 940
pF1KSD EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
820 830 840 850 860 870
950 960 970 980 990 1000
pF1KSD EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
880 890 900 910 920 930
1010 1020
pF1KSD KQSKKLKNRETKNKKDMKLKRKK
:::::::::::::::::::::::
NP_001 KQSKKLKNRETKNKKDMKLKRKK
940 950
1025 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:59:53 2016 done: Thu Nov 3 06:59:55 2016
Total Scan time: 13.430 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]