FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1712, 390 aa
  1>>>pF1KSDA1712 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4579+/-0.00101; mu= 11.4728+/- 0.061
 mean_var=87.1424+/-16.973, 0's: 0 Z-trim(105.9): 16  B-trim: 12 in 1/50
 Lambda= 0.137391
 statistics sampled from 8665 (8671) to 8665 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS34106.1 CEP44 gene_id:80817|Hs108|chr4         ( 390) 2501 505.8 2.8e-143
CCDS47163.1 CEP44 gene_id:80817|Hs108|chr4         ( 399) 2316 469.1 3.1e-132


>>CCDS34106.1 CEP44 gene_id:80817|Hs108|chr4              (390 aa)
 initn: 2501 init1: 2501 opt: 2501  Z-score: 2685.9  bits: 505.8 E(32554): 2.8e-143
Smith-Waterman score: 2501; 99.7% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KSD MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KELSSLQKIPSQQRKKISSGKSEPPLSNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYN
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS34 KELSSLQKIPSQQRKKISSGKSEPPLGNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EDNVDISEDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEITALQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EDNVDISEDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEITALQTM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRASTVNYCGLNEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRASTVNYCGLNEI
              310       320       330       340       350       360

              370       380       390
pF1KSD SEETTIQKMERMKKMFEETAELLKCPNHYL
       ::::::::::::::::::::::::::::::
CCDS34 SEETTIQKMERMKKMFEETAELLKCPNHYL
              370       380       390

>>CCDS47163.1 CEP44 gene_id:80817|Hs108|chr4              (399 aa)
 initn: 2316 init1: 2316 opt: 2316  Z-score: 2487.6  bits: 469.1 E(32554): 3.1e-132
Smith-Waterman score: 2316; 99.7% identity (100.0% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KSD MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KELSSLQKIPSQQRKKISSGKSEPPLSNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYN
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS47 KELSSLQKIPSQQRKKISSGKSEPPLGNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EDNVDISEDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEITALQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDNVDISEDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEITALQTM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRASTVNYCGLNEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRASTVNYCGLNEI
              310       320       330       340       350       360

              370       380       390         
pF1KSD SEETTIQKMERMKKMFEETAELLKCPNHYL         
       ::                                     
CCDS47 SENFPAWSATSSCSSLSWLLRGHTSYLSSQSFAWPLSCV
              370       380       390         




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:01:15 2016 done: Thu Nov  3 07:01:15 2016
 Total Scan time:  2.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]