FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1715, 428 aa
  1>>>pF1KSDA1715 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1905+/-0.000933; mu= -6.5597+/- 0.057
 mean_var=345.9906+/-69.497, 0's: 0 Z-trim(116.3): 6  B-trim: 0 in 0/54
 Lambda= 0.068951
 statistics sampled from 16935 (16940) to 16935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.52), width:  16
 Scan time:  3.570

The best scores are:                                      opt bits E(32554)
CCDS33332.1 LNPK gene_id:80856|Hs108|chr2          ( 428) 2864 298.1 1.1e-80
CCDS77488.1 LNPK gene_id:80856|Hs108|chr2          ( 305) 2061 218.1 9.6e-57
CCDS77489.1 LNPK gene_id:80856|Hs108|chr2          ( 459) 1572 169.6 5.8e-42


>>CCDS33332.1 LNPK gene_id:80856|Hs108|chr2               (428 aa)
 initn: 2864 init1: 2864 opt: 2864  Z-score: 1561.9  bits: 298.1 E(32554): 1.1e-80
Smith-Waterman score: 2864; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KSD MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD CFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSSVGPLPSGSVLSSDNQFNEESLEHDVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSSVGPLPSGSVLSSDNQFNEESLEHDVLD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQETENEEASVIETNSTVPGADSIPDPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQETENEEASVIETNSTVPGADSIPDPEL
              370       380       390       400       410       420

               
pF1KSD SGESLTAE
       ::::::::
CCDS33 SGESLTAE
               

>>CCDS77488.1 LNPK gene_id:80856|Hs108|chr2               (305 aa)
 initn: 2061 init1: 2061 opt: 2061  Z-score: 1132.2  bits: 218.1 E(32554): 9.6e-57
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (124-428:1-305)

           100       110       120       130       140       150   
pF1KSD IIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDPDSKKAKECEPPS
                                     ::::::::::::::::::::::::::::::
CCDS77                               MEKETYKTAKLILERFDPDSKKAKECEPPS
                                             10        20        30

           160       170       180       190       200       210   
pF1KSD AGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVT
               40        50        60        70        80        90

           220       230       240       250       260       270   
pF1KSD PALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYA
              100       110       120       130       140       150

           280       290       300       310       320       330   
pF1KSD LICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSS
              160       170       180       190       200       210

           340       350       360       370       380       390   
pF1KSD VGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQ
              220       230       240       250       260       270

           400       410       420        
pF1KSD ETENEEASVIETNSTVPGADSIPDPELSGESLTAE
       :::::::::::::::::::::::::::::::::::
CCDS77 ETENEEASVIETNSTVPGADSIPDPELSGESLTAE
              280       290       300     

>>CCDS77489.1 LNPK gene_id:80856|Hs108|chr2               (459 aa)
 initn: 1572 init1: 1572 opt: 1572  Z-score: 866.9  bits: 169.6 E(32554): 5.8e-42
Smith-Waterman score: 2792; 93.2% identity (93.2% similar) in 459 aa overlap (1-428:1-459)

               10        20        30        40        50        60
pF1KSD MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGM-----
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS77 ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMEMGLP
              190       200       210       220       230       240

                                   240       250       260         
pF1KSD --------------------------GLHPPGPPLARPILPRERGALDRIVEYLVGDGPQ
                                 ::::::::::::::::::::::::::::::::::
CCDS77 HIAQAGLEHLSSSDLSTSTSQSAGITGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQ
              250       260       270       280       290       300

     270       280       290       300       310       320         
pF1KSD NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVE
              310       320       330       340       350       360

     330       340       350       360       370       380         
pF1KSD GSSSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GSSSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEP
              370       380       390       400       410       420

     390       400       410       420        
pF1KSD EEKQETENEEASVIETNSTVPGADSIPDPELSGESLTAE
       :::::::::::::::::::::::::::::::::::::::
CCDS77 EEKQETENEEASVIETNSTVPGADSIPDPELSGESLTAE
              430       440       450         




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:01:48 2016 done: Thu Nov  3 07:01:49 2016
 Total Scan time:  3.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]