FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA1715, 428 aa 1>>>pF1KSDA1715 428 - 428 aa - 428 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.1905+/-0.000933; mu= -6.5597+/- 0.057 mean_var=345.9906+/-69.497, 0's: 0 Z-trim(116.3): 6 B-trim: 0 in 0/54 Lambda= 0.068951 statistics sampled from 16935 (16940) to 16935 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.52), width: 16 Scan time: 3.570 The best scores are: opt bits E(32554) CCDS33332.1 LNPK gene_id:80856|Hs108|chr2 ( 428) 2864 298.1 1.1e-80 CCDS77488.1 LNPK gene_id:80856|Hs108|chr2 ( 305) 2061 218.1 9.6e-57 CCDS77489.1 LNPK gene_id:80856|Hs108|chr2 ( 459) 1572 169.6 5.8e-42 >>CCDS33332.1 LNPK gene_id:80856|Hs108|chr2 (428 aa) initn: 2864 init1: 2864 opt: 2864 Z-score: 1561.9 bits: 298.1 E(32554): 1.1e-80 Smith-Waterman score: 2864; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428) 10 20 30 40 50 60 pF1KSD MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD GPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD CFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSSVGPLPSGSVLSSDNQFNEESLEHDVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 CFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSSVGPLPSGSVLSSDNQFNEESLEHDVLD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KSD DNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQETENEEASVIETNSTVPGADSIPDPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQETENEEASVIETNSTVPGADSIPDPEL 370 380 390 400 410 420 pF1KSD SGESLTAE :::::::: CCDS33 SGESLTAE >>CCDS77488.1 LNPK gene_id:80856|Hs108|chr2 (305 aa) initn: 2061 init1: 2061 opt: 2061 Z-score: 1132.2 bits: 218.1 E(32554): 9.6e-57 Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (124-428:1-305) 100 110 120 130 140 150 pF1KSD IIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDPDSKKAKECEPPS :::::::::::::::::::::::::::::: CCDS77 MEKETYKTAKLILERFDPDSKKAKECEPPS 10 20 30 160 170 180 190 200 210 pF1KSD AGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 AGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVT 40 50 60 70 80 90 220 230 240 250 260 270 pF1KSD PALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYA 100 110 120 130 140 150 280 290 300 310 320 330 pF1KSD LICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 LICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGSSS 160 170 180 190 200 210 340 350 360 370 380 390 pF1KSD VGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEPEEKQ 220 230 240 250 260 270 400 410 420 pF1KSD ETENEEASVIETNSTVPGADSIPDPELSGESLTAE ::::::::::::::::::::::::::::::::::: CCDS77 ETENEEASVIETNSTVPGADSIPDPELSGESLTAE 280 290 300 >>CCDS77489.1 LNPK gene_id:80856|Hs108|chr2 (459 aa) initn: 1572 init1: 1572 opt: 1572 Z-score: 866.9 bits: 169.6 E(32554): 5.8e-42 Smith-Waterman score: 2792; 93.2% identity (93.2% similar) in 459 aa overlap (1-428:1-459) 10 20 30 40 50 60 pF1KSD MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 EEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTP 130 140 150 160 170 180 190 200 210 220 230 pF1KSD ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGM----- ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 ASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMEMGLP 190 200 210 220 230 240 240 250 260 pF1KSD --------------------------GLHPPGPPLARPILPRERGALDRIVEYLVGDGPQ :::::::::::::::::::::::::::::::::: CCDS77 HIAQAGLEHLSSSDLSTSTSQSAGITGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQ 250 260 270 280 290 300 270 280 290 300 310 320 pF1KSD NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVE 310 320 330 340 350 360 330 340 350 360 370 380 pF1KSD GSSSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 GSSSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQTDDKIPATEQTNQVIEKASDSEEP 370 380 390 400 410 420 390 400 410 420 pF1KSD EEKQETENEEASVIETNSTVPGADSIPDPELSGESLTAE ::::::::::::::::::::::::::::::::::::::: CCDS77 EEKQETENEEASVIETNSTVPGADSIPDPELSGESLTAE 430 440 450 428 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 07:01:48 2016 done: Thu Nov 3 07:01:49 2016 Total Scan time: 3.570 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]