FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1720, 393 aa
  1>>>pF1KSDA1720 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6135+/-0.000803; mu= 9.0477+/- 0.049
 mean_var=174.8749+/-34.833, 0's: 0 Z-trim(114.4): 16  B-trim: 250 in 1/53
 Lambda= 0.096986
 statistics sampled from 14953 (14968) to 14953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.46), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS31126.1 SH3BP5L gene_id:80851|Hs108|chr1       ( 393) 2571 371.3 8.5e-103
CCDS2625.2 SH3BP5 gene_id:9467|Hs108|chr3          ( 455)  698 109.3 7.4e-24


>>CCDS31126.1 SH3BP5L gene_id:80851|Hs108|chr1            (393 aa)
 initn: 2571 init1: 2571 opt: 2571  Z-score: 1959.0  bits: 371.3 E(32554): 8.5e-103
Smith-Waterman score: 2571; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)

               10        20        30        40        50        60
pF1KSD MAELRQVPGGRETPQGELRPEVVEDEVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAELRQVPGGRETPQGELRPEVVEDEVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QEELEHLNQASEEINQVELQLDEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEELEHLNQASEEINQVELQLDEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RLAKEAQQETQKAALRYERAVSMHNAAREMVFVAEQGVMADKNRLDPTWQEMLNHATCKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLAKEAQQETQKAALRYERAVSMHNAAREMVFVAEQGVMADKNRLDPTWQEMLNHATCKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NEAEEERLRGEREHQRVTRLCQQAEARVQALQKTLRRAIGKSRPYFELKAQFSQILEEHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NEAEEERLRGEREHQRVTRLCQQAEARVQALQKTLRRAIGKSRPYFELKAQFSQILEEHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD AKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRRGGLPPHPLGPRRSSPVGAEAGPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRRGGLPPHPLGPRRSSPVGAEAGPED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MEDGDSGIEGAEGAGLEEGSSLGPGPAPDTDTLSLLSLRTVASDLQKCDSVEHLRGLSDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEDGDSGIEGAEGAGLEEGSSLGPGPAPDTDTLSLLSLRTVASDLQKCDSVEHLRGLSDH
              310       320       330       340       350       360

              370       380       390   
pF1KSD VSLDGQELGTRSGGRRGSDGGARGGRHQRSVSL
       :::::::::::::::::::::::::::::::::
CCDS31 VSLDGQELGTRSGGRRGSDGGARGGRHQRSVSL
              370       380       390   

>>CCDS2625.2 SH3BP5 gene_id:9467|Hs108|chr3               (455 aa)
 initn: 386 init1: 355 opt: 698  Z-score: 541.8  bits: 109.3 E(32554): 7.4e-24
Smith-Waterman score: 698; 45.1% identity (76.3% similar) in 253 aa overlap (52-303:37-284)

              30        40        50        60        70        80 
pF1KSD VVEDEVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRIQEELEHLNQASEEINQVELQL
                                     ::::.::::: :::.:::....::. : .:
CCDS26 RSRSEEPAEILPPARDEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDINRRETEL
         10        20        30        40        50        60      

              90       100       110       120       130       140 
pF1KSD DEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEARRLAKEAQQETQKAALRYERAV
       ..::  .: .: :.. ::.   ...:. .: ..::.::::.:..:: :.:::.  ..::.
CCDS26 EDARQKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQDFQRAT
         70        80        90       100       110       120      

             150       160        170       180       190       200
pF1KSD SMHNAAREMVFVAEQGVMADKNR-LDPTWQEMLNHATCKVNEAEEERLRGEREHQRVTRL
        .  ::.: . .::: .. : .: .: .::::::::: .: :::. . :.:  :....  
CCDS26 EVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAAR
        130       140       150       160       170       180      

              210       220       230       240       250       260
pF1KSD CQQAEARVQALQKTLRRAIGKSRPYFELKAQFSQILEEHKAKVTELEQQVAQAKTRYSVA
        . : .:.. :.: :.:::.::.:::::::..   ::. :  : .:. ... :: .:..:
CCDS26 YNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMA
        190       200       210       220       230       240      

              270       280       290       300       310       320
pF1KSD LRNLEQISEQIHARRRGGLPPHPLGPRRSSPVGAEAGPEDMEDGDSGIEGAEGAGLEEGS
       :.:::.::..:: :::..     .::: .  ::::..  ..::                 
CCDS26 LKNLEMISDEIHERRRSS----AMGPR-GCGVGAEGSSTSVEDLPGSKPEPDAISVASEA
        250       260            270       280       290       300 

              330       340       350       360       370       380
pF1KSD SLGPGPAPDTDTLSLLSLRTVASDLQKCDSVEHLRGLSDHVSLDGQELGTRSGGRRGSDG
                                                                   
CCDS26 FEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMM
             310       320       330       340       350       360 




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:03:54 2016 done: Thu Nov  3 07:03:54 2016
 Total Scan time:  3.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]