Result of FASTA (ccds) for
pF1KSDA1724
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1724, 386 aa
1>>>pF1KSDA1724 386 - 386 aa - 386 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2578+/-0.00105; mu= 16.7665+/- 0.062
mean_var=62.5498+/-13.885, 0's: 0 Z-trim(102.7): 25 B-trim: 383 in 1/47
Lambda= 0.162167
statistics sampled from 7064 (7078) to 7064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.217), width: 16
Scan time: 2.550
The best scores are: opt bits E(32554)
CCDS46240.1 SELENOI gene_id:85465|Hs108|chr2 ( 397) 2614 620.5 7.9e-178
CCDS830.1 CEPT1 gene_id:10390|Hs108|chr1 ( 416) 489 123.4 3.7e-28
CCDS9086.1 CHPT1 gene_id:56994|Hs108|chr12 ( 406) 470 118.9 8e-27
>>CCDS46240.1 SELENOI gene_id:85465|Hs108|chr2 (397 aa)
initn: 2614 init1: 2614 opt: 2614 Z-score: 3306.1 bits: 620.5 E(32554): 7.9e-178
Smith-Waterman score: 2614; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KSD MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD NFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH
310 320 330 340 350 360
370 380
pF1KSD YGVRVVKQLSSHFQIYPFSLRKPNSD
::::::::::::::::::::::::::
CCDS46 YGVRVVKQLSSHFQIYPFSLRKPNSDCLGMEEKNIGL
370 380 390
>>CCDS830.1 CEPT1 gene_id:10390|Hs108|chr1 (416 aa)
initn: 340 init1: 195 opt: 489 Z-score: 618.9 bits: 123.4 E(32554): 3.7e-28
Smith-Waterman score: 489; 27.2% identity (62.2% similar) in 386 aa overlap (7-381:43-407)
10 20 30
pF1KSD MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPF
.: .:: .....:... . : .:. .
CCDS83 DSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAGRSLLE-PLMQGY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD WNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGIL
:. .:. :.:.::::::. :. . . . .:.... : . ...: :..:. .
CCDS83 WEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPT------ATEQAPLWAYIACACG
80 90 100 110 120
100 110 120 130 140 150
pF1KSD NFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVV-TVYSIFGRGSTGVSVFV
:. .::..:::::::::::.::::::::: :: : :. :. : .. . :..
CCDS83 LFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAV----QLGTNPDW
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD LYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIV--TAVVGVEAWYEPFL
... .. : : .::. : .: : . :...: : :. :. ::.: ... ..
CCDS83 MFFCCFAGTFMFYCAHWQTYVSGTLRFGI-IDVTEVQI-FIIIMHLLAVIGGPPFWQSMI
190 200 210 220 230
220 230 240 250 260 270
pF1KSD --FNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLF-
.:. .. .: :. :.. :. .: :.:: .. . :. : . ..:: : .
CCDS83 PVLNIQMK-IFPAL---CTVAGTI-FSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIG
240 250 260 270 280 290
280 290 300 310 320
pF1KSD -ILSTAWILWSPSDI--LELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLV-P
... : .... : . .: :: .. . : . :. : .:.: .:.... . .. :
CCDS83 SVITLAAMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGP
300 310 320 330 340 350
330 340 350 360 370 380
pF1KSD LFLVVLVVNLGVASYVESILLYTLTTAFTLAH-IHYGVRVVKQLSSHFQIYPFSLRKPNS
..: .. :... .. .. .:.. :.: : : .:..::..:. : ..
CCDS83 ---ALLFLDQYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTA
360 370 380 390 400 410
pF1KSD D
CCDS83 HSNHH
>>CCDS9086.1 CHPT1 gene_id:56994|Hs108|chr12 (406 aa)
initn: 356 init1: 189 opt: 470 Z-score: 595.0 bits: 118.9 E(32554): 8e-27
Smith-Waterman score: 474; 27.6% identity (58.7% similar) in 387 aa overlap (5-378:19-382)
10 20 30 40
pF1KSD MAGYEYVSPEQLAGFDKYKYSAVDTN----PLSLYVMHPFWNTIVK
: .: :: .....:::. .. ::.:: :. ...
CCDS90 MAAGAGAGSAPRWLRALSEPLSAAQLRRLEEHRYSAAGVSLLEPPLQLY-----WTWLLQ
10 20 30 40 50
50 60 70 80 90 100
pF1KSD VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYT
.: :.::: ::. :. . : . :.. . : . ...: :.... .. :. .
CCDS90 WIPLWMAPNSITLLGLAVNVVTTLVLISYCP------TATEEAPYWTYLLCALGLFIYQS
60 70 80 90 100
110 120 130 140 150 160
pF1KSD LDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWV
::..:::::::::: .::::::::: :: : :...: . :: .: .: . : .. ..
CCDS90 LDAIDGKQARRTNSCSPLGELFDHGCDSLSTVFMAVGA-SIAARLGTYPDWF--FFCSFI
110 120 130 140 150 160
170 180 190 200 210 220
pF1KSD VLFSFILSHWEKYNTGILFLPWGYDISQVTISFV--YIVTAVVGVEAWYEPFLFNFLYRD
.: : .::. : .:.: . :.... :..: ....: :. : . . .:
CCDS90 GMFVFYCAHWQTYVSGMLRFG-KVDVTEIQIALVIVFVLSAFGGATMW--DYTIPILEIK
170 180 190 200 210 220
230 240 250 260 270
pF1KSD LFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCL----LFILSTAW
: ..: : . : :.:. .. . :. : . ..:: : ..::.
CCDS90 LKILPVLGFLGGVIFSCS--NYFHVILHGGVGKNGSTIAGTSVLSPGLHIGLIIILAIMI
230 240 250 260 270 280
280 290 300 310 320 330
pF1KSD ILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPLFLV--VLVV
: .:..: :: .. .: : .::. . .:.: .:.... .: .:: .: .
CCDS90 YKKSATDVFEKHPCLYILMFGCVFAKVSQKLVVAHMTKSEL----YLQDTVFLGPGLLFL
290 300 310 320 330
340 350 360 370 380
pF1KSD NLGVASYV-ESILLYTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSD
. ... : ..:. . .. . : . :.: :... :
CCDS90 DQYFNNFIDEYVVLWMAMVISSFDMVIYFSALCLQISRHLHLNIFKTACHQAPEQVQVLS
340 350 360 370 380 390
CCDS90 SKSHQNNMD
400
386 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:08:35 2016 done: Thu Nov 3 07:08:35 2016
Total Scan time: 2.550 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]