FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1735, 472 aa
  1>>>pF1KSDA1735 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2157+/-0.00109; mu= 0.5036+/- 0.065
 mean_var=248.7184+/-51.252, 0's: 0 Z-trim(110.7): 32  B-trim: 94 in 1/52
 Lambda= 0.081324
 statistics sampled from 11799 (11812) to 11799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.363), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS73382.1 DIXDC1 gene_id:85458|Hs108|chr11       ( 472) 3112 378.5 8.5e-105
CCDS73381.1 DIXDC1 gene_id:85458|Hs108|chr11       ( 683) 3054 371.8 1.3e-102


>>CCDS73382.1 DIXDC1 gene_id:85458|Hs108|chr11            (472 aa)
 initn: 3112 init1: 3112 opt: 3112  Z-score: 1994.9  bits: 378.5 E(32554): 8.5e-105
Smith-Waterman score: 3112; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KSD MGGTQVKCLTSPSPIHSAKSESIITQSEEKADFVIIPAEGIENRTEGTDSPLSRDWRPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGGTQVKCLTSPSPIHSAKSESIITQSEEKADFVIIPAEGIENRTEGTDSPLSRDWRPGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PGTYLETSWEEQLLEQQEYLEKEMEEAKKMISGLQALLLNGSLPEDEQERPLALCEPGVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PGTYLETSWEEQLLEQQEYLEKEMEEAKKMISGLQALLLNGSLPEDEQERPLALCEPGVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PEEQLIIIQSRLDQSMEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PEEQLIIIQSRLDQSMEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLRANMDKDELHNQNVDLQRKLDERNRLLGEYKKELGQKDRLLQQHQAKLEEALRKLSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLRANMDKDELHNQNVDLQRKLDERNRLLGEYKKELGQKDRLLQQHQAKLEEALRKLSDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SYHQVDLERELEHKDVLLAHCMKREADEATNYNSHNSQSNGFLLPTAGKGATSVSNRGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SYHQVDLERELEHKDVLLAHCMKREADEATNYNSHNSQSNGFLLPTAGKGATSVSNRGTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLQLVRDALRSLRNSFSGHDPQHHTIDSLEQGISSLMERLHVMETQKKQERKVRVKSPRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DLQLVRDALRSLRNSFSGHDPQHHTIDSLEQGISSLMERLHVMETQKKQERKVRVKSPRT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QVGSEYRESWPPNSKLPHSQSSPTVSSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QVGSEYRESWPPNSKLPHSQSSPTVSSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFK
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KSD AAIDREGNHRYHFKALDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEEDHGEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AAIDREGNHRYHFKALDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEEDHGEN
              430       440       450       460       470  

>>CCDS73381.1 DIXDC1 gene_id:85458|Hs108|chr11            (683 aa)
 initn: 3053 init1: 3053 opt: 3054  Z-score: 1955.9  bits: 371.8 E(32554): 1.3e-102
Smith-Waterman score: 3054; 98.7% identity (99.4% similar) in 471 aa overlap (4-472:213-683)

                                            10        20        30 
pF1KSD                            MGGTQVKC--LTSPSPIHSAKSESIITQSEEKA
                                     .. .:  :::::::::::::::::::::::
CCDS73 RNSSMDEEIENPYWSVRALVQQYEGQQRSPSESSCSSLTSPSPIHSAKSESIITQSEEKA
            190       200       210       220       230       240  

              40        50        60        70        80        90 
pF1KSD DFVIIPAEGIENRTEGTDSPLSRDWRPGSPGTYLETSWEEQLLEQQEYLEKEMEEAKKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DFVIIPAEGIENRTEGTDSPLSRDWRPGSPGTYLETSWEEQLLEQQEYLEKEMEEAKKMI
            250       260       270       280       290       300  

             100       110       120       130       140       150 
pF1KSD SGLQALLLNGSLPEDEQERPLALCEPGVNPEEQLIIIQSRLDQSMEENQDLKKELLKCKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SGLQALLLNGSLPEDEQERPLALCEPGVNPEEQLIIIQSRLDQSMEENQDLKKELLKCKQ
            310       320       330       340       350       360  

             160       170       180       190       200       210 
pF1KSD EARNLQGIKDALQQRLTQQDTSVLQLKQELLRANMDKDELHNQNVDLQRKLDERNRLLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EARNLQGIKDALQQRLTQQDTSVLQLKQELLRANMDKDELHNQNVDLQRKLDERNRLLGE
            370       380       390       400       410       420  

             220       230       240       250       260       270 
pF1KSD YKKELGQKDRLLQQHQAKLEEALRKLSDVSYHQVDLERELEHKDVLLAHCMKREADEATN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YKKELGQKDRLLQQHQAKLEEALRKLSDVSYHQVDLERELEHKDVLLAHCMKREADEATN
            430       440       450       460       470       480  

             280       290       300       310       320       330 
pF1KSD YNSHNSQSNGFLLPTAGKGATSVSNRGTSDLQLVRDALRSLRNSFSGHDPQHHTIDSLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YNSHNSQSNGFLLPTAGKGATSVSNRGTSDLQLVRDALRSLRNSFSGHDPQHHTIDSLEQ
            490       500       510       520       530       540  

             340       350       360       370       380       390 
pF1KSD GISSLMERLHVMETQKKQERKVRVKSPRTQVGSEYRESWPPNSKLPHSQSSPTVSSTCTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GISSLMERLHVMETQKKQERKVRVKSPRTQVGSEYRESWPPNSKLPHSQSSPTVSSTCTK
            550       560       570       580       590       600  

             400       410       420       430       440       450 
pF1KSD VLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIFHDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIFHDD
            610       620       630       640       650       660  

             460       470  
pF1KSD DAIPGWEGKIVAWVEEDHGEN
       :::::::::::::::::::::
CCDS73 DAIPGWEGKIVAWVEEDHGEN
            670       680   




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:09:56 2016 done: Thu Nov  3 07:09:57 2016
 Total Scan time:  3.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]