Result of FASTA (omim) for
pF1KSDA1750
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1750, 417 aa
1>>>pF1KSDA1750 417 - 417 aa - 417 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3125+/-0.000319; mu= 14.3756+/- 0.020
mean_var=131.1748+/-26.827, 0's: 0 Z-trim(120.1): 34 B-trim: 839 in 2/56
Lambda= 0.111982
statistics sampled from 34848 (34882) to 34848 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.409), width: 16
Scan time: 10.370
The best scores are: opt bits E(85289)
NP_277047 (OMIM: 614721) testis-specific Y-encoded ( 417) 2807 464.5 2.1e-130
NP_003300 (OMIM: 604714,608800) testis-specific Y- ( 437) 784 137.7 5.4e-32
NP_071400 (OMIM: 300564) testis-specific Y-encoded ( 693) 672 119.8 2.1e-26
XP_006724655 (OMIM: 300564) PREDICTED: testis-spec ( 694) 672 119.8 2.1e-26
NP_003299 (OMIM: 480100) testis-specific Y-encoded ( 308) 538 97.8 3.9e-20
NP_001307893 (OMIM: 480100) testis-specific Y-enco ( 221) 493 90.4 4.7e-18
NP_001184171 (OMIM: 480100) testis-specific Y-enco ( 294) 470 86.8 7.6e-17
NP_001116293 (OMIM: 600960) protein SET isoform 1 ( 290) 418 78.4 2.5e-14
XP_016870503 (OMIM: 600960) PREDICTED: protein SET ( 309) 418 78.5 2.6e-14
XP_016870504 (OMIM: 600960) PREDICTED: protein SET ( 309) 418 78.5 2.6e-14
XP_016870502 (OMIM: 600960) PREDICTED: protein SET ( 309) 418 78.5 2.6e-14
NP_001234930 (OMIM: 600960) protein SET isoform 4 ( 266) 397 75.0 2.5e-13
NP_001234929 (OMIM: 600960) protein SET isoform 3 ( 268) 394 74.5 3.5e-13
NP_003002 (OMIM: 600960) protein SET isoform 2 [Ho ( 277) 394 74.5 3.6e-13
XP_016870505 (OMIM: 600960) PREDICTED: protein SET ( 296) 394 74.6 3.8e-13
XP_016885216 (OMIM: 300564) PREDICTED: testis-spec ( 737) 393 74.8 8e-13
XP_016885215 (OMIM: 300564) PREDICTED: testis-spec ( 738) 393 74.8 8e-13
XP_016885553 (OMIM: 480100) PREDICTED: testis-spec ( 288) 359 68.9 1.9e-11
>>NP_277047 (OMIM: 614721) testis-specific Y-encoded-lik (417 aa)
initn: 2807 init1: 2807 opt: 2807 Z-score: 2462.0 bits: 464.5 E(85289): 2.1e-130
Smith-Waterman score: 2807; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)
10 20 30 40 50 60
pF1KSD MSGRSRGRKSSRAKNRGKGRAKARVRPAPDDAPRDPDPSQYQSLGEDTQAAQVQAGAGWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 MSGRSRGRKSSRAKNRGKGRAKARVRPAPDDAPRDPDPSQYQSLGEDTQAAQVQAGAGWG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAAARPGPGKAASLSERLAADT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 GLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAAARPGPGKAASLSERLAADT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 VFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AGEEKKEERDAGSGPPATEGSMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 AGEEKKEERDAGSGPPATEGSMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RNHLIQNIPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 RNHLIQNIPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NPYFQNKVLIKEYGCGPSGQVVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 NPYFQNKVLIKEYGCGPSGQVVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSI
310 320 330 340 350 360
370 380 390 400 410
pF1KSD ESDKIVEIINEELWPNPLQFYLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 ESDKIVEIINEELWPNPLQFYLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
370 380 390 400 410
>>NP_003300 (OMIM: 604714,608800) testis-specific Y-enco (437 aa)
initn: 835 init1: 742 opt: 784 Z-score: 695.4 bits: 137.7 E(85289): 5.4e-32
Smith-Waterman score: 852; 39.8% identity (62.8% similar) in 425 aa overlap (30-416:22-436)
10 20 30 40 50 60
pF1KSD MSGRSRGRKSSRAKNRGKGRAKARVRPAPDDAPRDPDPSQYQSLGEDTQAAQVQAGAGWG
:..: : : :: : ....:.::.: : :
NP_003 MSGLDGVKRTTPLQTHSIIISDQVPSDQDAHQYLRLRDQSEATQVMAEPGEG
10 20 30 40 50
70 80 90 100 110
pF1KSD GLEAAASAQLLRLGEEAACRLPLDC---GLALRARAAGDHGQAAARPGPGKAASLSERLA
: :..: .::.. .: : : . . :..: .:..: . : .. .: ::
NP_003 GSETVALPPP-PPSEEGG--VPQDAAGRGGTPQIRVVGGRGHVAIKAGQEEGQPPAEGLA
60 70 80 90 100
120 130 140 150
pF1KSD ADTVFVGT-----AGTVGRPKNAPRVGNRRGP----AGKKAPET------CSTAG-----
: .: ... :. : : : .:. :: .: :.:..
NP_003 AASVVMAADRSLKKGVQGGEKALEICGAQRSASELTAGAEAEAEEVKTGKCATVSAAVAE
110 120 130 140 150 160
160 170 180 190 200
pF1KSD -RGPQVIAGGRQKKGAA------------GENTSVSAGEEKKEERDAGSGP-PATEG-SM
.. .:. : .: . ::. :. .. .:: :: : :. :
NP_003 RESAEVVKEGLAEKEVMEEQMEVEEQPPEGEEIEVAEEDRLEEEAREEEGPWPLHEALRM
170 180 190 200 210 220
210 220 230 240 250 260
pF1KSD DTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQL
: :: .::.:...:::::::. .: .:::..: ..:::::..:::::::: ::.:::::
NP_003 DPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQL
230 240 250 260 270 280
270 280 290 300 310 320
pF1KSD ASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVV
.... .:. :.: :...:::.:: : : :.::.: :::::.::...::: ::.::
NP_003 SAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYEVRSSGRVV
290 300 310 320 330 340
330 340 350 360 370 380
pF1KSD SRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQFYL
: :::: : ::. ::. . : . ::: :::.:: :::::.:::.:.:::::::.::
NP_003 SLSTPIIWRRGHEPQSFIRRNQDLICSFFTWFSDHSLPESDKIAEIIKEDLWPNPLQYYL
350 360 370 380 390 400
390 400 410
pF1KSD LSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
: ::.: ..:. : ..:.: .: ::
NP_003 LREGVR-------RARRRPLREPVEIPRPFGFQSG
410 420 430
>>NP_071400 (OMIM: 300564) testis-specific Y-encoded-lik (693 aa)
initn: 735 init1: 659 opt: 672 Z-score: 595.1 bits: 119.8 E(85289): 2.1e-26
Smith-Waterman score: 733; 34.5% identity (62.9% similar) in 420 aa overlap (13-403:10-418)
10 20 30 40 50
pF1KSD MSGRSRGRKSSRAKNRGKGRAKARVR-PAPDDAPRD------PDPSQYQSLGEDTQAAQV
::.: . ... : : : : : :.: : :.:.::::
NP_071 MDRPDEGPPAKTRRLSSSESPQRDPPPPPPPPPLLRLPLPPPQQRPRLQEETEAAQV
10 20 30 40 50
60 70 80 90 100 110
pF1KSD QA---GAGWGGLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAAARPGPGKAA
: :.: : : . ::.. : . : :. : ... . : :.:
NP_071 LADMRGVGLG--PALPPPPPYVILEEGGIRAYFTLG----AECPG--WDSTIESGYGEAP
60 70 80 90 100
120 130 140 150 160 170
pF1KSD SLSERLAADTVFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQVIAGGRQKK
.: : : . ...:.. . .: . . .:. : ::::..: .:: .. ..:.
NP_071 PPTESLEALPTPEASGGSL---EIDFQVVQSSSFGGEGALETCSAVGWAPQRLVDPKSKE
110 120 130 140 150 160
180 190 200 210
pF1KSD GAA--------GENTSVSAGEEKKEERDAGS----------GPPATEGSMDTLENVQLKL
: : :. ........: . . :. ...::..:: :
NP_071 EAIIIVEDEDEDERESMRSSRRRRRRRRRKQRKVKRESRERNAERMESILQALEDIQLDL
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD ENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLASFLNSQEKE
: .: .: .:.:::.::: :.: ::::. .::.::::: .:: :::... ..: ....
NP_071 EAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINRRDED
230 240 250 260 270 280
280 290 300 310 320 330
pF1KSD VLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVVSRSTPIQWLP
.. ::..:.:..: .:::.:.::. :::: : :..::. . ::..::.::::.:
NP_071 IFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRLVSHSTPIRWHR
290 300 310 320 330 340
340 350 360 370 380 390
pF1KSD GHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQFYLLSEGARVEKG
:.. :. .:: . ..:::.:::::: :.:.:.:::...:: :::..:: .:.:...
NP_071 GQEPQARRHGNQDASHSFFSWFSNHSLPEADRIAEIIKNDLWVNPLRYYLRERGSRIKRK
350 360 370 380 390 400
400 410
pF1KSD K-EKEGRQGPGKQPMETTQPGVSQSN
: : . :. :.
NP_071 KQEMKKRKTRGRCEVVIMEDAPDYYAVEDIFSEISDIDETIHDIKISDFMETTDYFETTD
410 420 430 440 450 460
>>XP_006724655 (OMIM: 300564) PREDICTED: testis-specific (694 aa)
initn: 735 init1: 659 opt: 672 Z-score: 595.1 bits: 119.8 E(85289): 2.1e-26
Smith-Waterman score: 733; 34.5% identity (62.9% similar) in 420 aa overlap (13-403:10-418)
10 20 30 40 50
pF1KSD MSGRSRGRKSSRAKNRGKGRAKARVR-PAPDDAPRD------PDPSQYQSLGEDTQAAQV
::.: . ... : : : : : :.: : :.:.::::
XP_006 MDRPDEGPPAKTRRLSSSESPQRDPPPPPPPPPLLRLPLPPPQQRPRLQEETEAAQV
10 20 30 40 50
60 70 80 90 100 110
pF1KSD QA---GAGWGGLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAAARPGPGKAA
: :.: : : . ::.. : . : :. : ... . : :.:
XP_006 LADMRGVGLG--PALPPPPPYVILEEGGIRAYFTLG----AECPG--WDSTIESGYGEAP
60 70 80 90 100
120 130 140 150 160 170
pF1KSD SLSERLAADTVFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQVIAGGRQKK
.: : : . ...:.. . .: . . .:. : ::::..: .:: .. ..:.
XP_006 PPTESLEALPTPEASGGSL---EIDFQVVQSSSFGGEGALETCSAVGWAPQRLVDPKSKE
110 120 130 140 150 160
180 190 200 210
pF1KSD GAA--------GENTSVSAGEEKKEERDAGS----------GPPATEGSMDTLENVQLKL
: : :. ........: . . :. ...::..:: :
XP_006 EAIIIVEDEDEDERESMRSSRRRRRRRRRKQRKVKRESRERNAERMESILQALEDIQLDL
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD ENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLASFLNSQEKE
: .: .: .:.:::.::: :.: ::::. .::.::::: .:: :::... ..: ....
XP_006 EAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINRRDED
230 240 250 260 270 280
280 290 300 310 320 330
pF1KSD VLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVVSRSTPIQWLP
.. ::..:.:..: .:::.:.::. :::: : :..::. . ::..::.::::.:
XP_006 IFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRLVSHSTPIRWHR
290 300 310 320 330 340
340 350 360 370 380 390
pF1KSD GHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQFYLLSEGARVEKG
:.. :. .:: . ..:::.:::::: :.:.:.:::...:: :::..:: .:.:...
XP_006 GQEPQARRHGNQDASHSFFSWFSNHSLPEADRIAEIIKNDLWVNPLRYYLRERGSRIKRK
350 360 370 380 390 400
400 410
pF1KSD K-EKEGRQGPGKQPMETTQPGVSQSN
: : . :. :.
XP_006 KQEMKKRKTRGRCEVVIMEDAPDYYAVEDIFSEISDIDETIHDIKISDFMETTDYFETTD
410 420 430 440 450 460
>>NP_003299 (OMIM: 480100) testis-specific Y-encoded pro (308 aa)
initn: 556 init1: 523 opt: 538 Z-score: 482.6 bits: 97.8 E(85289): 3.9e-20
Smith-Waterman score: 538; 38.8% identity (69.2% similar) in 227 aa overlap (173-397:78-302)
150 160 170 180 190 200
pF1KSD GPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDA--GSGPPATEG
: :. : :: .. ..: : :: . :.
NP_003 GAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPES
50 60 70 80 90 100
210 220 230 240 250 260
pF1KSD SMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHP
. . : ::..:: .:::: .:. : .:. . : ::.::. .::..::::.... :::
NP_003 APEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHP
110 120 130 140 150 160
270 280 290 300 310 320
pF1KSD QLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQ
:............:::. :::: : :: ..: ::::::::. ::: . .
NP_003 QMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEY
170 180 190 200 210 220
330 340 350 360 370 380
pF1KSD VVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQF
.:.::::.: : ..... . . ... .::.:::.:. :.::.::. ..:: ::::.
NP_003 RASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQY
230 240 250 260 270 280
390 400 410
pF1KSD YLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
: . :.: : :
NP_003 YKRMKPP--EEGTETSGDSQLLS
290 300
>>NP_001307893 (OMIM: 480100) testis-specific Y-encoded (221 aa)
initn: 489 init1: 489 opt: 493 Z-score: 445.1 bits: 90.4 E(85289): 4.7e-18
Smith-Waterman score: 493; 40.7% identity (74.1% similar) in 189 aa overlap (210-397:30-215)
180 190 200 210 220 230
pF1KSD SAGEEKKEERDAGSGPPATEGSMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLE
..:: .:::: .:. : .:. . : ::.
NP_001 MRPEGSLTYRVPERLRQGFCGVGRAAQALVELEPVNAQARKAFSRQREKMERRRKPHLD
10 20 30 40 50
240 250 260 270 280 290
pF1KSD RRNHLIQNIPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEV-EELGLARLGYKIKFYF
::. .::..::::.... ::::............:::. :::: :: ..: :: ..:
NP_001 RRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLC-KIMLFF
60 70 80 90 100 110
300 310 320 330 340 350
pF1KSD DRNPYFQNKVLIKEYGCGPSGQVVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHS
::::::::. ::: . . .:.::::.: : ..... . . ... .::.:::.:.
NP_001 RSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHN
120 130 140 150 160 170
360 370 380 390 400 410
pF1KSD SIESDKIVEIINEELWPNPLQFYLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
:.::.::. ..:: ::::.: .. :.: : :
NP_001 FAGSNKIAEILCKDLWRNPLQYY--KRMKPPEEGTETSGDSQLLS
180 190 200 210 220
>>NP_001184171 (OMIM: 480100) testis-specific Y-encoded (294 aa)
initn: 490 init1: 457 opt: 470 Z-score: 423.5 bits: 86.8 E(85289): 7.6e-17
Smith-Waterman score: 470; 38.6% identity (70.6% similar) in 197 aa overlap (173-367:78-274)
150 160 170 180 190 200
pF1KSD GPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDA--GSGPPATEG
: :. : :: .. ..: : :: . :.
NP_001 GAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPES
50 60 70 80 90 100
210 220 230 240 250 260
pF1KSD SMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHP
. . : ::..:: .:::: .:. : .:. . : ::.::. .::..::::.... :::
NP_001 APEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHP
110 120 130 140 150 160
270 280 290 300 310 320
pF1KSD QLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQ
:............:::. :::: : :: ..: ::::::::. ::: . .
NP_001 QMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEY
170 180 190 200 210 220
330 340 350 360 370 380
pF1KSD VVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQF
.:.::::.: : ..... . . ... .::.:::.:. :.::.:
NP_001 RASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAESPDRSYVRTCGAI
230 240 250 260 270 280
390 400 410
pF1KSD YLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
NP_001 PCNTTRG
290
>>NP_001116293 (OMIM: 600960) protein SET isoform 1 [Hom (290 aa)
initn: 561 init1: 386 opt: 418 Z-score: 378.1 bits: 78.4 E(85289): 2.5e-14
Smith-Waterman score: 555; 37.9% identity (68.8% similar) in 240 aa overlap (175-400:25-257)
150 160 170 180 190 200
pF1KSD AGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDAGSGPPATEGSMDT
:.::.::: :: :.. . ...
NP_001 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQ-------QEAIEH
10 20 30 40
210 220 230 240 250 260
pF1KSD LENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLAS
...:: ... .: ::.. :.. .:...:: ...:..:: .::.:: .: ::::...
NP_001 IDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSA
50 60 70 80 90 100
270 280 290 300 310 320
pF1KSD FLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVVSR
.:. ...:.: ::. .:: :. . ::.: ::::.::::.:::: ::. . ::. :.
NP_001 LLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSK
110 120 130 140 150 160
330 340 350 360 370
pF1KSD STPIQWLPGHDL---QSLSQGNPENNR------SFFGWFSNHSSIESDKIVEIINEELWP
:: :.: :.:: .: .:.. .: ::: ::..::. .:.. :.:....::
NP_001 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWP
170 180 190 200 210 220
380 390 400 410
pF1KSD NPLQFYLLS-----EGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
::::.::. :: : . : ..:
NP_001 NPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEG
230 240 250 260 270 280
>>XP_016870503 (OMIM: 600960) PREDICTED: protein SET iso (309 aa)
initn: 561 init1: 386 opt: 418 Z-score: 377.8 bits: 78.5 E(85289): 2.6e-14
Smith-Waterman score: 555; 37.9% identity (68.8% similar) in 240 aa overlap (175-400:25-257)
150 160 170 180 190 200
pF1KSD AGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDAGSGPPATEGSMDT
:.::.::: :: :.. . ...
XP_016 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQ-------QEAIEH
10 20 30 40
210 220 230 240 250 260
pF1KSD LENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLAS
...:: ... .: ::.. :.. .:...:: ...:..:: .::.:: .: ::::...
XP_016 IDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSA
50 60 70 80 90 100
270 280 290 300 310 320
pF1KSD FLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVVSR
.:. ...:.: ::. .:: :. . ::.: ::::.::::.:::: ::. . ::. :.
XP_016 LLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSK
110 120 130 140 150 160
330 340 350 360 370
pF1KSD STPIQWLPGHDL---QSLSQGNPENNR------SFFGWFSNHSSIESDKIVEIINEELWP
:: :.: :.:: .: .:.. .: ::: ::..::. .:.. :.:....::
XP_016 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWP
170 180 190 200 210 220
380 390 400 410
pF1KSD NPLQFYLLS-----EGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
::::.::. :: : . : ..:
XP_016 NPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEVKEN
230 240 250 260 270 280
>>XP_016870504 (OMIM: 600960) PREDICTED: protein SET iso (309 aa)
initn: 561 init1: 386 opt: 418 Z-score: 377.8 bits: 78.5 E(85289): 2.6e-14
Smith-Waterman score: 555; 37.9% identity (68.8% similar) in 240 aa overlap (175-400:25-257)
150 160 170 180 190 200
pF1KSD AGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDAGSGPPATEGSMDT
:.::.::: :: :.. . ...
XP_016 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQ-------QEAIEH
10 20 30 40
210 220 230 240 250 260
pF1KSD LENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLAS
...:: ... .: ::.. :.. .:...:: ...:..:: .::.:: .: ::::...
XP_016 IDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSA
50 60 70 80 90 100
270 280 290 300 310 320
pF1KSD FLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQVVSR
.:. ...:.: ::. .:: :. . ::.: ::::.::::.:::: ::. . ::. :.
XP_016 LLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSK
110 120 130 140 150 160
330 340 350 360 370
pF1KSD STPIQWLPGHDL---QSLSQGNPENNR------SFFGWFSNHSSIESDKIVEIINEELWP
:: :.: :.:: .: .:.. .: ::: ::..::. .:.. :.:....::
XP_016 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWP
170 180 190 200 210 220
380 390 400 410
pF1KSD NPLQFYLLS-----EGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
::::.::. :: : . : ..:
XP_016 NPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEVKEN
230 240 250 260 270 280
417 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:13:51 2016 done: Thu Nov 3 07:13:52 2016
Total Scan time: 10.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]