FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1753, 810 aa
  1>>>pF1KSDA1753 810 - 810 aa - 810 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4410+/-0.000869; mu= 2.4461+/- 0.052
 mean_var=213.4617+/-42.928, 0's: 0 Z-trim(114.5): 14  B-trim: 0 in 0/53
 Lambda= 0.087784
 statistics sampled from 15086 (15095) to 15086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.464), width:  16
 Scan time:  5.000

The best scores are:                                      opt bits E(32554)
CCDS45778.2 UNK gene_id:85451|Hs108|chr17          ( 810) 5631 726.1 5.7e-209
CCDS32359.1 UNKL gene_id:64718|Hs108|chr16         ( 277) 1326 180.6 3.1e-45
CCDS61787.1 UNKL gene_id:64718|Hs108|chr16         ( 229)  618 90.9 2.6e-18


>>CCDS45778.2 UNK gene_id:85451|Hs108|chr17               (810 aa)
 initn: 5631 init1: 5631 opt: 5631  Z-score: 3865.2  bits: 726.1 E(32554): 5.7e-209
Smith-Waterman score: 5631; 100.0% identity (100.0% similar) in 810 aa overlap (1-810:1-810)

               10        20        30        40        50        60
pF1KSD MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQCPLFVQHKCTQHRPYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQCPLFVQHKCTQHRPYT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD CFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTERRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTERRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSEN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD TFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGAAELARLRQELDEANST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGAAELARLRQELDEANST
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD IKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALEVQVKKLQEELERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALEVQVKKLQEELERL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD HAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCLKCQEQKRAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCLKCQEQKRAVL
              730       740       750       760       770       780

              790       800       810
pF1KSD PCQHAALCELCAEGSECPICQPGRAHTLQS
       ::::::::::::::::::::::::::::::
CCDS45 PCQHAALCELCAEGSECPICQPGRAHTLQS
              790       800       810

>>CCDS32359.1 UNKL gene_id:64718|Hs108|chr16              (277 aa)
 initn: 1328 init1: 970 opt: 1326  Z-score: 925.6  bits: 180.6 E(32554): 3.1e-45
Smith-Waterman score: 1326; 74.0% identity (87.6% similar) in 242 aa overlap (14-252:3-244)

               10        20          30        40        50        
pF1KSD MSKGPGPGGSAASSAPPAATAQVLQAQP--EKPQHYTYLKEFRTEQCPLFVQHKCTQHRP
                    :.  ::.: .  . :  ::: :: ::::::::::::: ::::.::::
CCDS32            MPSVSKAAAAALSGSPPQTEKPTHYRYLKEFRTEQCPLFSQHKCAQHRP
                          10        20        30        40         

       60        70        80        90       100       110        
pF1KSD YTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTER
       .:::::::.:::::: .:::::::::::::::.::.::::.::.:::::.::::::::::
CCDS32 FTCFHWHFLNQRRRRPLRRRDGTFNYSPDVYCSKYNEATGVCPDGDECPYLHRTTGDTER
      50        60        70        80        90       100         

      120       130       140       150       160       170        
pF1KSD RYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTT
       .::::::::: ::::::..:.:.:::::::::::: ::: :: :.:::::.:::::::  
CCDS32 KYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGPLDLRPPVCDVRELQAQEALQNGQLG
     110       120       130       140       150       160         

       180       190       200       210       220       230       
pF1KSD V-EGSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYY
         ::  . : .  ::.:::::::::.::::.. .:::.:::: : :::::::::::::.:
CCDS32 GGEGVPDLQPGVLASQAMIEKILSEDPRWQDANFVLGSYKTEQCPKPPRLCRQGYACPHY
     170       180       190       200       210       220         

       240       250       260       270       280       290       
pF1KSD HNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRTEQQFHPEIYKST
       :::.::::.::. .:                                             
CCDS32 HNSRDRRRNPRRFQYSWQLGRRVLRLSPRANNPRVALPRVHTGPSSTA            
     230       240       250       260       270                   

>>CCDS61787.1 UNKL gene_id:64718|Hs108|chr16              (229 aa)
 initn: 540 init1: 439 opt: 618  Z-score: 442.2  bits: 90.9 E(32554): 2.6e-18
Smith-Waterman score: 618; 48.8% identity (74.9% similar) in 203 aa overlap (613-802:25-226)

            590       600       610       620       630       640  
pF1KSD LSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGP
                                     ::::. .:::. :.::::::. :: . .::
CCDS61       MTCCSQVPPRRRPSLALSPRLDCNGLNGVPGSIWD-FVSGSFSPSPSPILSAGP
                     10        20        30         40        50   

                    650       660       670       680       690    
pF1KSD --------GAAELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGA
               ..:::::.:..::::.  :.::::::.:.::.::::..::.:: ::: .: .
CCDS61 PSSSSASPNGAELARVRRQLDEAKRKIRQWEESWQQVKQVCDAWQREAQEAKERARVADS
            60        70        80        90       100       110   

          700       710       720       730       740       750    
pF1KSD ECELAREQRDALEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHL
       . .:: .... .:.:::.:::::: : ..    .: . .:. .. :  :.:::.:::  :
CCDS61 DRQLALQKKEEVEAQVKQLQEELEGLGVASTLPGLRGCGDIGTIPLPKLHSLQSQLRLDL
           120       130       140       150       160       170   

          760       770        780        790        800           
pF1KSD EQVDKAVFHMQSVKCLKCQEQKR-AVL-PCQHAALCELCAEGS-ECPIC--QPGRAHTLQ
       : :: ..:.... .:. :.:. . ::: ::::  ::: ::  . ::: :  ::       
CCDS61 EAVDGVIFQLRAKQCVACRERAHGAVLRPCQHHILCEPCAATAPECPYCKGQPLQW    
           180       190       200       210       220             

     810
pF1KSD S




810 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:14:30 2016 done: Thu Nov  3 07:14:31 2016
 Total Scan time:  5.000 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]