FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1778, 325 aa
  1>>>pF1KSDA1778 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4317+/-0.000696; mu= 8.7709+/- 0.042
 mean_var=151.2873+/-30.332, 0's: 0 Z-trim(116.0): 30  B-trim: 103 in 1/50
 Lambda= 0.104273
 statistics sampled from 16513 (16543) to 16513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.508), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13       ( 325) 2201 341.8 4.4e-94
CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4         ( 473)  630 105.6 8.1e-23
CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5        ( 428)  599 100.9 1.9e-21


>>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13            (325 aa)
 initn: 2201 init1: 2201 opt: 2201  Z-score: 1802.6  bits: 341.8 E(32554): 4.4e-94
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KSD MALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WRMFTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 WRMFTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITVCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITVCG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTGTC
              250       260       270       280       290       300

              310       320     
pF1KSD AFASSTDQSEDKIWTSYTEYVFCRE
       :::::::::::::::::::::::::
CCDS94 AFASSTDQSEDKIWTSYTEYVFCRE
              310       320     

>>CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4              (473 aa)
 initn: 894 init1: 540 opt: 630  Z-score: 523.1  bits: 105.6 E(32554): 8.1e-23
Smith-Waterman score: 1056; 51.9% identity (73.8% similar) in 343 aa overlap (1-324:1-321)

                   10              20        30        40        50
pF1KSD MALADSTRG----LP------NGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRC
       ::: :.  :    ::      .... :...... .   :  ::..::::::::::::.. 
CCDS34 MALKDTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHS
               10        20        30        40        50        60

               60        70               80        90       100   
pF1KSD TVVSVPDSLLWRMFTQQQPQ-------ELARDSKGRFFLDRDGFLFRYILDYLRDLQLVL
       :..::::: :  ::. ..:.       :: :::..:::.:::::::::.:::::: ::.:
CCDS34 TLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLAL
               70        80        90       100       110       120

           110       120       130       140       150         160 
pF1KSD PDYFPERSRLQREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGD--ELLPLGY
       :..:::. :: ::::::.: .::. : .:.        .. ... ::  .:  . .  : 
CCDS34 PEHFPEKERLLREAEYFQLTDLVKLL-SPKVT------KQNSLNDEGCQSDLEDNVSQGS
              130       140        150             160       170   

             170       180       190       200       210       220 
pF1KSD SEPEQQEGASAGAPSPTLELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIG
       :.    .::.:..::     .  . .::..:     .:.    .:::..:.:::::::  
CCDS34 SDALLLRGAAAAVPS-----GPGAHGGGGGG----GAQD----KRSGFLTLGYRGSYTTV
           180            190           200           210       220

             230       240       250       260       270       280 
pF1KSD RDAQADAKFRRVARITVCGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAF
       :: :::::::::::: :::. .:::::::::::::::::: ::.::::.::::..:::::
CCDS34 RDNQADAKFRRVARIMVCGRIALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAF
              230       240       250       260       270       280

             290       300       310       320                     
pF1KSD DKLSESGFHMVACSSTGTCAFASSTDQSEDKIWTSYTEYVFCRE                
       :.:::.:::::::.:.:: ::...    .::::.:::::.: :                 
CCDS34 DRLSEAGFHMVACNSSGTAAFVNQ--YRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKH
              290       300         310       320       330        

CCDS34 DKVTDKGSESGTSCNELSTSSCDSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPV
      340       350       360       370       380       390        

>>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5             (428 aa)
 initn: 1086 init1: 515 opt: 599  Z-score: 498.5  bits: 100.9 E(32554): 1.9e-21
Smith-Waterman score: 1033; 56.3% identity (73.8% similar) in 302 aa overlap (26-325:17-279)

               10        20        30        40        50        60
pF1KSD MALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLL
                                :: :  ::..:::::::::: ::. :..:.: :::
CCDS34          MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLL
                        10        20        30        40        50 

                 70        80        90       100       110        
pF1KSD WRMFTQQQP--QELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAE
       :.::. ..   ..::.:::::::.:::::::::::::::: :.::::.:::..::.::::
CCDS34 WKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAE
              60        70        80        90       100       110 

      120       130       140       150       160       170        
pF1KSD YFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPT
       ::.::.::. : .:..   .:              ::.    .      : :: :. .  
CCDS34 YFQLPDLVKLL-TPDEIKQSP--------------DEFCHSDF------EDASQGSDT--
             120        130                           140          

      180       190       200       210       220       230        
pF1KSD LELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITV
            :         .  ::. : ..:. :.::.::::: :.::..::::::::: :: :
CCDS34 -----R---------ICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRVPRILV
                    150       160       170       180       190    

      240       250       260       270       280       290        
pF1KSD CGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTG
       ::. ::::::::.:::::::::: :::::::.::::. ::.::: ::: :::::::.:. 
CCDS34 CGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSV
          200       210       220       230       240       250    

      300       310       320                                      
pF1KSD TCAFASSTDQSEDKIWTSYTEYVFCRE                                 
       : .: .  . ..::::.::::::: ::                                 
CCDS34 TASFIN--QYTDDKIWSSYTEYVFYREPSRWSPSHCDCCCKNGKGDKEGESGTSCNDLST
          260         270       280       290       300       310  




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:16:27 2016 done: Thu Nov  3 07:16:28 2016
 Total Scan time:  3.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]