FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1810, 565 aa
  1>>>pF1KSDA1810 565 - 565 aa - 565 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8231+/-0.00119; mu= -10.7142+/- 0.072
 mean_var=651.5123+/-132.151, 0's: 0 Z-trim(117.4): 48  B-trim: 61 in 1/54
 Lambda= 0.050247
 statistics sampled from 18054 (18098) to 18054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.556), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(32554)
CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11         ( 616) 3042 235.4 1.5e-61
CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11        ( 617) 3030 234.5 2.8e-61


>>CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11              (616 aa)
 initn: 3853 init1: 3042 opt: 3042  Z-score: 1218.3  bits: 235.4 E(32554): 1.5e-61
Smith-Waterman score: 3646; 91.5% identity (91.5% similar) in 597 aa overlap (20-565:20-616)

               10        20        30        40        50        60
pF1KSD MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
                          :::::::::::::::::::::::::::::::::::::::::
CCDS80 MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
               70        80        90       100       110       120

                                                                   
pF1KSD EDRVDF---------------------------------------------------YAI
       ::::::                                                   :::
CCDS80 EDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAI
              130       140       150       160       170       180

     130       140       150       160       170       180         
pF1KSD LMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
              190       200       210       220       230       240

     190       200       210       220       230       240         
pF1KSD PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
              250       260       270       280       290       300

     250       260       270       280       290       300         
pF1KSD GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPP
              310       320       330       340       350       360

     310       320       330       340       350       360         
pF1KSD PLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAA
              370       380       390       400       410       420

     370       380       390       400       410       420         
pF1KSD TTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGF
              430       440       450       460       470       480

     430       440       450       460       470       480         
pF1KSD AGLTPEELRALEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 AGLTPEELRALEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVN
              490       500       510       520       530       540

     490       500       510       520       530       540         
pF1KSD STEETATTVVAAASSTSIPSSEATTPTPGASPPAPEMERPPAPESVGTEEMPEDGEPDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 STEETATTVVAAASSTSIPSSEATTPTPGASPPAPEMERPPAPESVGTEEMPEDGEPDAA
              550       560       570       580       590       600

     550       560     
pF1KSD ELRRRRLQKLESPVAH
       ::::::::::::::::
CCDS80 ELRRRRLQKLESPVAH
              610      

>>CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11             (617 aa)
 initn: 2511 init1: 1700 opt: 3030  Z-score: 1213.6  bits: 234.5 E(32554): 2.8e-61
Smith-Waterman score: 3634; 91.3% identity (91.3% similar) in 598 aa overlap (20-565:20-617)

               10        20        30        40        50        60
pF1KSD MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
                          :::::::::::::::::::::::::::::::::::::::::
CCDS31 MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
               70        80        90       100       110       120

                                                                   
pF1KSD EDRVDF---------------------------------------------------YAI
       ::::::                                                   :::
CCDS31 EDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAI
              130       140       150       160       170       180

     130       140       150       160       170       180         
pF1KSD LMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
              190       200       210       220       230       240

     190       200       210       220       230       240         
pF1KSD PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
              250       260       270       280       290       300

     250       260       270       280       290       300         
pF1KSD GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPP
              310       320       330       340       350       360

     310       320       330       340       350       360         
pF1KSD PLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAA-LSRPSGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS31 PLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAAALSRPSGA
              370       380       390       400       410       420

      370       380       390       400       410       420        
pF1KSD ATTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ATTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAG
              430       440       450       460       470       480

      430       440       450       460       470       480        
pF1KSD FAGLTPEELRALEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FAGLTPEELRALEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSV
              490       500       510       520       530       540

      490       500       510       520       530       540        
pF1KSD NSTEETATTVVAAASSTSIPSSEATTPTPGASPPAPEMERPPAPESVGTEEMPEDGEPDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSTEETATTVVAAASSTSIPSSEATTPTPGASPPAPEMERPPAPESVGTEEMPEDGEPDA
              550       560       570       580       590       600

      550       560     
pF1KSD AELRRRRLQKLESPVAH
       :::::::::::::::::
CCDS31 AELRRRRLQKLESPVAH
              610       




565 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:24:54 2016 done: Thu Nov  3 07:24:55 2016
 Total Scan time:  4.500 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]