Result of FASTA (ccds) for
pF1KSDA1819
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1819, 1153 aa
1>>>pF1KSDA1819 1153 - 1153 aa - 1153 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0937+/-0.00115; mu= -5.8576+/- 0.069
mean_var=426.6314+/-88.467, 0's: 0 Z-trim(115.0): 124 B-trim: 445 in 1/53
Lambda= 0.062094
statistics sampled from 15478 (15600) to 15478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.479), width: 16
Scan time: 5.560
The best scores are: opt bits E(32554)
CCDS44714.1 MAML2 gene_id:84441|Hs108|chr11 (1156) 7778 711.9 2.2e-204
>>CCDS44714.1 MAML2 gene_id:84441|Hs108|chr11 (1156 aa)
initn: 5259 init1: 4423 opt: 7778 Z-score: 3782.9 bits: 711.9 E(32554): 2.2e-204
Smith-Waterman score: 7778; 99.7% identity (99.7% similar) in 1156 aa overlap (1-1153:1-1156)
10 20 30 40 50 60
pF1KSD MGDTAPPQAPAGGLGGASGAGLLGGGSVTPRVHSAIVERLRARIAVCRQHHLSCEGRYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGDTAPPQAPAGGLGGASGAGLLGGGSVTPRVHSAIVERLRARIAVCRQHHLSCEGRYER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GRAESSDRERESTLQLLSLVQHGQGARKAGKHTKATATAATTTAPPPPPAAPPAASQAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GRAESSDRERESTLQLLSLVQHGQGARKAGKHTKATATAATTTAPPPPPAAPPAASQAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TAAPPPPPDYHHHHQQHLLNSSNNGGSGGINGEQQPPASTPGDQRNSALIALQGSLKRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAAPPPPPDYHHHHQQHLLNSSNNGGSGGINGEQQPPASTPGDQRNSALIALQGSLKRKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKTNTLPSHTHSPGNGLFNMGLKEVKKEPGETLSCSKHMDGQMTQENIFPNRYGDDPGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RKTNTLPSHTHSPGNGLFNMGLKEVKKEPGETLSCSKHMDGQMTQENIFPNRYGDDPGEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFNIDLGQQSQRSTPRPSLPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFNIDLGQQSQRSTPRPSLPME
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KIVIKSEYSPGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KIVIKSEYSPGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SRALPSWQEVSHAQQLKQIAANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SRALPSWQEVSHAQQLKQIAANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQEKI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDLSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDLSRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQ
550 560 570 580 590 600
610 620 630 640 650
pF1KSD QQQQQQQQQQQQQQQQQQ---SSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQ
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS44 QQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQ
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD QQQQQPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQRQDQHSVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QQQQQPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQRQDQHSVVG
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD QNTGPSPSPNPCSNPNTGSGYMNSQQSLLNQQLMGKKQTLQRQIMEQKQQLLLQQQMLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QNTGPSPSPNPCSNPNTGSGYMNSQQSLLNQQLMGKKQTLQRQIMEQKQQLLLQQQMLAD
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD AEKIAPQDQINRHLSRPPPDYKDQRRNVGNMQPTAQYSGGSSTISLNSNQALANPVSTHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AEKIAPQDQINRHLSRPPPDYKDQRRNVGNMQPTAQYSGGSSTISLNSNQALANPVSTHT
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD ILTPNSSLLSTSHGTRMPSLSTAVQNMGMYGNLPCNQPNTYSVTSGMNQLTQQRNPKQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ILTPNSSLLSTSHGTRMPSLSTAVQNMGMYGNLPCNQPNTYSVTSGMNQLTQQRNPKQLL
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD ANQNNPMMPRPPTLGPSNNNNVATFGAGSVGNSQQLRPNLTHSMASMPPQRTSNVMITSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ANQNNPMMPRPPTLGPSNNNNVATFGAGSVGNSQQLRPNLTHSMASMPPQRTSNVMITSN
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KSD TTAPNWASQEGTSKQQEALTSAGVRFPTGTPAAYTPNQSLQQAVGSQQFSQRAVAPPNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TTAPNWASQEGTSKQQEALTSAGVRFPTGTPAAYTPNQSLQQAVGSQQFSQRAVAPPNQL
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD TPAVQMRPMNQMSQTLNGQTMGPLRGLNLRPNQLSTQILPNLNQSGTGLNQSRTGINQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TPAVQMRPMNQMSQTLNGQTMGPLRGLNLRPNQLSTQILPNLNQSGTGLNQSRTGINQPP
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KSD SLTPSNFPSPNQSSRAFQGTDHSSDLAFDFLSQQNDNMGPALNSDADFIDSLLKTEPGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLTPSNFPSPNQSSRAFQGTDHSSDLAFDFLSQQNDNMGPALNSDADFIDSLLKTEPGND
1090 1100 1110 1120 1130 1140
1140 1150
pF1KSD DWMKDINLDEILGNNS
::::::::::::::::
CCDS44 DWMKDINLDEILGNNS
1150
1153 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:10:58 2016 done: Thu Nov 3 19:10:58 2016
Total Scan time: 5.560 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]